Analysis of interatomic Contacts of Structural Units in PDB entry:
2DGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DGE entry

There are 4 chains in PDB entry 2DGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 71VAL 172
B
 GLN 71VAL 172
C
 GLN 71VAL 172
D
 GLN 71PRO 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2DGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 86Right-handed alpha
Helix 2
2
A
86 91Right-handed alpha
Helix 3
3
A
92 94Right-handed 310
Helix 4
4
A
104 112Right-handed alpha
Helix 5
5
A
115 126Right-handed alpha
Helix 6
6
A
139 143Right-handed 310
Helix 7
7
A
150 168Right-handed alpha
Helix 8
8
B
72 86Right-handed alpha
Helix 9
9
B
86 91Right-handed alpha
Helix 10
10
B
92 94Right-handed 310
Helix 11
11
B
104 111Right-handed alpha
Helix 12
12
B
115 125Right-handed alpha
Helix 13
13
B
139 143Right-handed 310
Helix 14
14
B
150 168Right-handed alpha
Helix 15
15
C
72 86Right-handed alpha
Helix 16
16
C
86 91Right-handed alpha
Helix 17
17
C
92 94Right-handed 310
Helix 18
18
C
104 111Right-handed alpha
Helix 19
19
C
115 126Right-handed alpha
Helix 20
20
C
139 143Right-handed 310
Helix 21
21
C
150 167Right-handed alpha
Helix 22
22
D
72 86Right-handed alpha
Helix 23
23
D
86 91Right-handed alpha
Helix 24
24
D
92 94Right-handed 310
Helix 25
25
D
104 111Right-handed alpha
Helix 26
26
D
115 126Right-handed alpha
Helix 27
27
D
139 143Right-handed 310
Helix 28
28
D
150 168Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2DGE.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
130 131anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il