Analysis of interatomic Contacts of Structural Units in PDB entry:
2DGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DGK entry

There are 6 chains in PDB entry 2DGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29THR 466
B
 SER 29THR 466
C
 LYS 30THR 466
D
 SER 29THR 466
E
 SER 29THR 466
F
 SER 29THR 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 99 helices in PDB entry 2DGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 50Right-handed alpha
Helix 2
2
A
51 53Right-handed 310
Helix 3
3
A
69 79Right-handed alpha
Helix 4
4
A
90 108Right-handed alpha
Helix 5
5
A
125 148Right-handed alpha
Helix 6
6
A
163 173Right-handed alpha
Helix 7
7
A
190 198Right-handed alpha
Helix 8
8
A
219 235Right-handed alpha
Helix 9
9
A
246 249Right-handed 310
Helix 10
10
A
250 255Right-handed alpha
Helix 11
11
A
291 295Right-handed 310
Helix 12
12
A
296 300Right-handed 310
Helix 13
13
A
321 359Right-handed alpha
Helix 14
14
A
391 402Right-handed alpha
Helix 15
15
A
430 451Right-handed alpha
Helix 16
16
A
452 455Right-handed 310
Helix 17
17
B
38 50Right-handed alpha
Helix 18
18
B
51 53Right-handed 310
Helix 19
19
B
69 79Right-handed alpha
Helix 20
20
B
90 108Right-handed alpha
Helix 21
21
B
125 148Right-handed alpha
Helix 22
22
B
163 173Right-handed alpha
Helix 23
23
B
190 198Right-handed alpha
Helix 24
24
B
219 235Right-handed alpha
Helix 25
25
B
246 249Right-handed 310
Helix 26
26
B
250 255Right-handed alpha
Helix 27
27
B
291 295Right-handed 310
Helix 28
28
B
296 300Right-handed 310
Helix 29
29
B
321 358Right-handed alpha
Helix 30
30
B
359 361Right-handed 310
Helix 31
31
B
391 401Right-handed alpha
Helix 32
32
B
430 451Right-handed alpha
Helix 33
33
B
452 455Right-handed 310
Helix 34
34
C
38 50Right-handed alpha
Helix 35
35
C
51 53Right-handed 310
Helix 36
36
C
69 79Right-handed alpha
Helix 37
37
C
90 108Right-handed alpha
Helix 38
38
C
125 148Right-handed alpha
Helix 39
39
C
163 173Right-handed alpha
Helix 40
40
C
190 198Right-handed alpha
Helix 41
41
C
219 235Right-handed alpha
Helix 42
42
C
246 249Right-handed 310
Helix 43
43
C
250 255Right-handed alpha
Helix 44
44
C
291 295Right-handed 310
Helix 45
45
C
296 300Right-handed 310
Helix 46
46
C
321 360Right-handed alpha
Helix 47
47
C
391 402Right-handed alpha
Helix 48
48
C
430 451Right-handed alpha
Helix 49
49
C
452 455Right-handed 310
Helix 50
50
D
38 50Right-handed alpha
Helix 51
51
D
51 53Right-handed 310
Helix 52
52
D
69 79Right-handed alpha
Helix 53
53
D
90 108Right-handed alpha
Helix 54
54
D
125 148Right-handed alpha
Helix 55
55
D
163 173Right-handed alpha
Helix 56
56
D
190 198Right-handed alpha
Helix 57
57
D
219 235Right-handed alpha
Helix 58
58
D
246 249Right-handed 310
Helix 59
59
D
250 255Right-handed alpha
Helix 60
60
D
291 295Right-handed 310
Helix 61
61
D
296 300Right-handed 310
Helix 62
62
D
321 359Right-handed alpha
Helix 63
63
D
391 401Right-handed alpha
Helix 64
64
D
430 451Right-handed alpha
Helix 65
65
D
452 455Right-handed 310
Helix 66
66
E
38 51Right-handed alpha
Helix 67
67
E
69 79Right-handed alpha
Helix 68
68
E
90 108Right-handed alpha
Helix 69
69
E
125 148Right-handed alpha
Helix 70
70
E
163 173Right-handed alpha
Helix 71
71
E
190 198Right-handed alpha
Helix 72
72
E
219 235Right-handed alpha
Helix 73
73
E
246 249Right-handed 310
Helix 74
74
E
250 255Right-handed alpha
Helix 75
75
E
291 295Right-handed 310
Helix 76
76
E
296 300Right-handed 310
Helix 77
77
E
321 358Right-handed alpha
Helix 78
78
E
359 361Right-handed 310
Helix 79
79
E
391 402Right-handed alpha
Helix 80
80
E
412 416Right-handed 310
Helix 81
81
E
430 451Right-handed alpha
Helix 82
82
E
452 455Right-handed 310
Helix 83
83
F
38 50Right-handed alpha
Helix 84
84
F
51 53Right-handed 310
Helix 85
85
F
69 79Right-handed alpha
Helix 86
86
F
90 108Right-handed alpha
Helix 87
87
F
125 148Right-handed alpha
Helix 88
88
F
163 173Right-handed alpha
Helix 89
89
F
190 198Right-handed alpha
Helix 90
90
F
219 235Right-handed alpha
Helix 91
91
F
246 249Right-handed 310
Helix 92
92
F
250 255Right-handed alpha
Helix 93
93
F
291 295Right-handed 310
Helix 94
94
F
296 300Right-handed 310
Helix 95
95
F
321 359Right-handed alpha
Helix 96
96
F
391 402Right-handed alpha
Helix 97
97
F
412 416Right-handed 310
Helix 98
98
F
430 451Right-handed alpha
Helix 99
99
F
452 455Right-handed 310
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There are 24 sheets in PDB entry 2DGK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
285 289anti-parallel
Strand 3
A
267 273anti-parallel
Strand 4
A
240 243parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
156 159parallel
Strand 3
A
202 206parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
310 312anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 368first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
419 424anti-parallel
Strand 4
A
408 410anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
285 289anti-parallel
Strand 3
B
267 273anti-parallel
Strand 4
B
240 243parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
156 159parallel
Strand 3
B
202 206parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
310 312anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 368first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
419 424anti-parallel
Strand 4
B
408 410anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 123first strand
Strand 2
C
285 289anti-parallel
Strand 3
C
267 273anti-parallel
Strand 4
C
240 243parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 179first strand
Strand 2
C
156 159parallel
Strand 3
C
202 206parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
301 303first strand
Strand 2
C
310 312anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
363 368first strand
Strand 2
C
377 382anti-parallel
Strand 3
C
419 424anti-parallel
Strand 4
C
408 410anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 123first strand
Strand 2
D
285 289anti-parallel
Strand 3
D
267 273anti-parallel
Strand 4
D
240 243parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 179first strand
Strand 2
D
156 159parallel
Strand 3
D
202 206parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
301 303first strand
Strand 2
D
310 312anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
363 368first strand
Strand 2
D
377 382anti-parallel
Strand 3
D
419 424anti-parallel
Strand 4
D
408 410anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 123first strand
Strand 2
E
285 289anti-parallel
Strand 3
E
267 273anti-parallel
Strand 4
E
240 243parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 179first strand
Strand 2
E
156 159parallel
Strand 3
E
202 206parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
301 303first strand
Strand 2
E
310 312anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
363 368first strand
Strand 2
E
377 382anti-parallel
Strand 3
E
419 424anti-parallel
Strand 4
E
408 410anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
119 123first strand
Strand 2
F
285 289anti-parallel
Strand 3
F
267 273anti-parallel
Strand 4
F
240 243parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
176 179first strand
Strand 2
F
156 159parallel
Strand 3
F
202 206parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
301 303first strand
Strand 2
F
310 312anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
363 368first strand
Strand 2
F
377 382anti-parallel
Strand 3
F
419 424anti-parallel
Strand 4
F
408 410anti-parallel
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