Analysis of interatomic Contacts of Structural Units in PDB entry:
2DGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DGM entry

There are 6 chains in PDB entry 2DGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 454
B
 LYS 3LYS 453
C
 LYS 3GLY 456
D
 LYS 3GLY 456
E
 LYS 3PRO 452
F
 LYS 3GLY 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 2DGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
20 24Right-handed 310
Helix 3
3
A
38 50Right-handed alpha
Helix 4
4
A
51 54Right-handed 310
Helix 5
5
A
55 59Right-handed 310
Helix 6
6
A
69 79Right-handed alpha
Helix 7
7
A
90 108Right-handed alpha
Helix 8
8
A
125 149Right-handed alpha
Helix 9
9
A
163 173Right-handed alpha
Helix 10
10
A
190 198Right-handed alpha
Helix 11
11
A
219 235Right-handed alpha
Helix 12
12
A
246 249Right-handed 310
Helix 13
13
A
250 255Right-handed alpha
Helix 14
14
A
291 295Right-handed 310
Helix 15
15
A
296 300Right-handed 310
Helix 16
16
A
321 359Right-handed alpha
Helix 17
17
A
391 401Right-handed alpha
Helix 18
18
A
412 416Right-handed 310
Helix 19
19
A
430 451Right-handed alpha
Helix 20
20
B
3 15Right-handed alpha
Helix 21
21
B
20 24Right-handed 310
Helix 22
22
B
38 50Right-handed alpha
Helix 23
23
B
51 54Right-handed 310
Helix 24
24
B
55 59Right-handed 310
Helix 25
25
B
69 79Right-handed alpha
Helix 26
26
B
90 108Right-handed alpha
Helix 27
27
B
125 147Right-handed alpha
Helix 28
28
B
164 173Right-handed alpha
Helix 29
29
B
190 198Right-handed alpha
Helix 30
30
B
219 235Right-handed alpha
Helix 31
31
B
246 249Right-handed 310
Helix 32
32
B
250 255Right-handed alpha
Helix 33
33
B
291 295Right-handed 310
Helix 34
34
B
296 300Right-handed 310
Helix 35
35
B
321 359Right-handed alpha
Helix 36
36
B
391 401Right-handed alpha
Helix 37
37
B
430 451Right-handed alpha
Helix 38
38
C
3 15Right-handed alpha
Helix 39
39
C
20 24Right-handed 310
Helix 40
40
C
38 50Right-handed alpha
Helix 41
41
C
51 53Right-handed 310
Helix 42
42
C
55 59Right-handed 310
Helix 43
43
C
69 79Right-handed alpha
Helix 44
44
C
90 108Right-handed alpha
Helix 45
45
C
125 149Right-handed alpha
Helix 46
46
C
164 173Right-handed alpha
Helix 47
47
C
190 198Right-handed alpha
Helix 48
48
C
219 235Right-handed alpha
Helix 49
49
C
246 249Right-handed 310
Helix 50
50
C
250 255Right-handed alpha
Helix 51
51
C
291 295Right-handed 310
Helix 52
52
C
296 300Right-handed 310
Helix 53
53
C
321 359Right-handed alpha
Helix 54
54
C
391 401Right-handed alpha
Helix 55
55
C
412 416Right-handed 310
Helix 56
56
C
430 451Right-handed alpha
Helix 57
57
C
452 455Right-handed 310
Helix 58
58
D
3 15Right-handed alpha
Helix 59
59
D
20 24Right-handed 310
Helix 60
60
D
38 50Right-handed alpha
Helix 61
61
D
51 54Right-handed 310
Helix 62
62
D
55 59Right-handed 310
Helix 63
63
D
69 80Right-handed alpha
Helix 64
64
D
90 108Right-handed alpha
Helix 65
65
D
125 147Right-handed alpha
Helix 66
66
D
164 173Right-handed alpha
Helix 67
67
D
190 198Right-handed alpha
Helix 68
68
D
219 235Right-handed alpha
Helix 69
69
D
246 249Right-handed 310
Helix 70
70
D
250 255Right-handed alpha
Helix 71
71
D
291 295Right-handed 310
Helix 72
72
D
296 300Right-handed 310
Helix 73
73
D
321 359Right-handed alpha
Helix 74
74
D
391 401Right-handed alpha
Helix 75
75
D
412 416Right-handed 310
Helix 76
76
D
430 451Right-handed alpha
Helix 77
77
D
452 455Right-handed 310
Helix 78
78
E
3 15Right-handed alpha
Helix 79
79
E
20 24Right-handed 310
Helix 80
80
E
38 50Right-handed alpha
Helix 81
81
E
51 54Right-handed 310
Helix 82
82
E
55 59Right-handed 310
Helix 83
83
E
69 80Right-handed alpha
Helix 84
84
E
90 108Right-handed alpha
Helix 85
85
E
125 149Right-handed alpha
Helix 86
86
E
163 173Right-handed alpha
Helix 87
87
E
190 198Right-handed alpha
Helix 88
88
E
219 235Right-handed alpha
Helix 89
89
E
246 249Right-handed 310
Helix 90
90
E
250 255Right-handed alpha
Helix 91
91
E
291 295Right-handed 310
Helix 92
92
E
296 300Right-handed 310
Helix 93
93
E
321 359Right-handed alpha
Helix 94
94
E
391 401Right-handed alpha
Helix 95
95
E
412 416Right-handed 310
Helix 96
96
E
430 450Right-handed alpha
Helix 97
97
F
3 15Right-handed alpha
Helix 98
98
F
20 24Right-handed 310
Helix 99
99
F
38 50Right-handed alpha
Helix 100
100
F
51 54Right-handed 310
Helix 101
101
F
55 59Right-handed 310
Helix 102
102
F
69 79Right-handed alpha
Helix 103
103
F
90 108Right-handed alpha
Helix 104
104
F
125 147Right-handed alpha
Helix 105
105
F
164 173Right-handed alpha
Helix 106
106
F
190 198Right-handed alpha
Helix 107
107
F
219 235Right-handed alpha
Helix 108
108
F
246 249Right-handed 310
Helix 109
109
F
250 255Right-handed alpha
Helix 110
110
F
291 295Right-handed 310
Helix 111
111
F
296 300Right-handed 310
Helix 112
112
F
321 359Right-handed alpha
Helix 113
113
F
391 401Right-handed alpha
Helix 114
114
F
412 416Right-handed 310
Helix 115
115
F
430 451Right-handed alpha
Helix 116
116
F
452 455Right-handed 310
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There are 24 sheets in PDB entry 2DGM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
285 289anti-parallel
Strand 3
A
267 273anti-parallel
Strand 4
A
240 243parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
156 159parallel
Strand 3
A
202 206parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
308 312anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 368first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
419 424anti-parallel
Strand 4
A
408 410anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 123first strand
Strand 2
B
285 289anti-parallel
Strand 3
B
267 273anti-parallel
Strand 4
B
240 243parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
156 159parallel
Strand 3
B
202 206parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 305first strand
Strand 2
B
308 312anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 368first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
419 424anti-parallel
Strand 4
B
408 410anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 123first strand
Strand 2
C
285 289anti-parallel
Strand 3
C
267 273anti-parallel
Strand 4
C
240 243parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 179first strand
Strand 2
C
156 159parallel
Strand 3
C
202 206parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
301 305first strand
Strand 2
C
308 312anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
363 368first strand
Strand 2
C
377 382anti-parallel
Strand 3
C
419 424anti-parallel
Strand 4
C
408 410anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 123first strand
Strand 2
D
285 289anti-parallel
Strand 3
D
267 273anti-parallel
Strand 4
D
240 243parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 179first strand
Strand 2
D
156 159parallel
Strand 3
D
202 206parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
301 305first strand
Strand 2
D
308 312anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
363 368first strand
Strand 2
D
377 382anti-parallel
Strand 3
D
419 424anti-parallel
Strand 4
D
408 410anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
120 123first strand
Strand 2
E
285 289anti-parallel
Strand 3
E
267 273anti-parallel
Strand 4
E
240 243parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 179first strand
Strand 2
E
156 159parallel
Strand 3
E
202 206parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
301 305first strand
Strand 2
E
308 312anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
363 368first strand
Strand 2
E
377 382anti-parallel
Strand 3
E
419 424anti-parallel
Strand 4
E
408 410anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
120 123first strand
Strand 2
F
285 289anti-parallel
Strand 3
F
267 273anti-parallel
Strand 4
F
240 243parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
176 179first strand
Strand 2
F
156 159parallel
Strand 3
F
202 206parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
301 305first strand
Strand 2
F
308 312anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
363 368first strand
Strand 2
F
377 382anti-parallel
Strand 3
F
419 424anti-parallel
Strand 4
F
408 410anti-parallel
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