Analysis of interatomic Contacts of Structural Units in PDB entry:
2DH5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DH5 entry

There is 1 chain in PDB entry 2DH5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ILE 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2DH5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
21 38Right-handed alpha
Helix 3
3
A
38 52Right-handed alpha
Helix 4
4
A
62 67Right-handed alpha
Helix 5
5
A
79 81Right-handed 310
Helix 6
6
A
86 101Right-handed alpha
Helix 7
7
A
113 126Right-handed alpha
Helix 8
8
A
136 142Right-handed alpha
Helix 9
9
A
142 152Right-handed alpha
Helix 10
10
A
165 181Right-handed alpha
Helix 11
11
A
196 206Right-handed alpha
Helix 12
12
A
206 221Right-handed alpha
Helix 13
13
A
234 242Right-handed alpha
Helix 14
14
A
243 245Right-handed 310
Helix 15
15
A
269 274Right-handed alpha
Helix 16
16
A
310 319Right-handed alpha
Helix 17
17
A
329 344Right-handed alpha
Helix 18
18
A
348 364Right-handed alpha
Helix 19
19
A
380 382Right-handed 310
Helix 20
20
A
383 394Right-handed alpha
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There are 4 sheets in PDB entry 2DH5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
12 13anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
71 77anti-parallel
Strand 3
A
370 376parallel
Strand 4
A
226 230parallel
Strand 5
A
251 259parallel
Strand 6
A
323 328parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 159first strand
Strand 2
A
129 135parallel
Strand 3
A
105 109parallel
Strand 4
A
184 186parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 279first strand
Strand 2
A
282 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il