Analysis of interatomic Contacts of Structural Units in PDB entry:
2DH6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DH6 entry

There is 1 chain in PDB entry 2DH6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 17ILE 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2DH6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 37Right-handed alpha
Helix 2
2
A
38 54Right-handed alpha
Helix 3
3
A
78 81Right-handed 310
Helix 4
4
A
84 101Right-handed alpha
Helix 5
5
A
113 126Right-handed alpha
Helix 6
6
A
136 141Right-handed alpha
Helix 7
7
A
142 152Right-handed alpha
Helix 8
8
A
165 178Right-handed alpha
Helix 9
9
A
196 204Right-handed alpha
Helix 10
10
A
206 221Right-handed alpha
Helix 11
11
A
236 242Right-handed alpha
Helix 12
12
A
243 245Right-handed 310
Helix 13
13
A
310 319Right-handed alpha
Helix 14
14
A
328 344Right-handed alpha
Helix 15
15
A
348 365Right-handed alpha
Helix 16
16
A
384 394Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2DH6. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
371 375parallel
Strand 4
A
226 230parallel
Strand 5
A
251 257parallel
Strand 6
A
322 327parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 159first strand
Strand 2
A
129 135parallel
Strand 3
A
105 110parallel
Strand 4
A
184 186parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il