Analysis of interatomic Contacts of Structural Units in PDB entry:
2DI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DI3 entry

There are 2 chains in PDB entry 2DI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 232
B
 SER 2ALA 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2DI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 20Right-handed alpha
Helix 2
2
A
30 39Right-handed alpha
Helix 3
3
A
41 56Right-handed alpha
Helix 4
4
A
65 69Right-handed 310
Helix 5
5
A
78 90Right-handed alpha
Helix 6
6
A
94 112Right-handed alpha
Helix 7
7
A
119 130Right-handed alpha
Helix 8
8
A
136 153Right-handed alpha
Helix 9
9
A
157 180Right-handed alpha
Helix 10
10
A
184 205Right-handed alpha
Helix 11
11
A
207 230Right-handed alpha
Helix 12
12
B
2 20Right-handed alpha
Helix 13
13
B
30 39Right-handed alpha
Helix 14
14
B
41 56Right-handed alpha
Helix 15
15
B
78 90Right-handed alpha
Helix 16
16
B
94 112Right-handed alpha
Helix 17
17
B
114 118Right-handed 310
Helix 18
18
B
119 130Right-handed alpha
Helix 19
19
B
136 152Right-handed alpha
Helix 20
20
B
153 156Right-handed 310
Helix 21
21
B
157 180Right-handed alpha
Helix 22
22
B
184 206Right-handed alpha
Helix 23
23
B
207 230Right-handed alpha
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There are 2 sheets in PDB entry 2DI3. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
71 72anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
70 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il