Analysis of interatomic Contacts of Structural Units in PDB entry:
2DJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DJD entry

There is 1 chain in PDB entry 2DJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1THR 1249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2DJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 18Right-handed alpha
Helix 2
2
A
25 36Right-handed alpha
Helix 3
3
A
40 52Right-handed alpha
Helix 4
4
A
61 72Right-handed alpha
Helix 5
5
A
73 77Right-handed 310
Helix 6
6
A
80 88Right-handed alpha
Helix 7
7
A
89 111Right-handed alpha
Helix 8
8
A
114 138Right-handed alpha
Helix 9
9
A
141 153Right-handed alpha
Helix 10
10
A
153 172Right-handed alpha
Helix 11
11
A
176 186Right-handed alpha
Helix 12
12
A
195 231Right-handed alpha
Helix 13
13
A
241 255Right-handed alpha
Helix 14
14
A
265 284Right-handed alpha
Helix 15
15
A
295 303Right-handed alpha
Helix 16
16
A
306 312Right-handed alpha
Helix 17
17
A
318 324Right-handed alpha
Helix 18
18
A
328 335Right-handed alpha
Helix 19
19
A
350 356Right-handed alpha
Helix 20
20
A
379 385Right-handed alpha
Helix 21
21
A
386 405Right-handed alpha
Helix 22
22
A
406 408Right-handed 310
Helix 23
23
A
412 419Right-handed alpha
Helix 24
24
A
425 430Right-handed alpha
Helix 25
25
A
451 455Right-handed 310
Helix 26
26
A
461 468Right-handed alpha
Helix 27
27
A
488 498Right-handed alpha
Helix 28
28
A
526 542Right-handed alpha
Helix 29
29
A
547 561Right-handed alpha
Helix 30
30
A
572 602Right-handed alpha
Helix 31
31
A
604 630Right-handed alpha
Helix 32
32
A
643 662Right-handed alpha
Helix 33
33
A
665 683Right-handed alpha
Helix 34
34
A
685 705Right-handed alpha
Helix 35
35
A
710 723Right-handed alpha
Helix 36
36
A
734 747Right-handed alpha
Helix 37
37
A
762 767Right-handed alpha
Helix 38
38
A
772 796Right-handed alpha
Helix 39
39
A
823 841Right-handed alpha
Helix 40
40
A
841 856Right-handed alpha
Helix 41
41
A
867 898Right-handed alpha
Helix 42
42
A
899 906Right-handed alpha
Helix 43
43
A
912 926Right-handed alpha
Helix 44
44
A
930 944Right-handed alpha
Helix 45
45
A
947 955Right-handed alpha
Helix 46
46
A
964 970Right-handed alpha
Helix 47
47
A
973 992Right-handed alpha
Helix 48
48
A
993 1018Right-handed alpha
Helix 49
49
A
1028 1039Right-handed alpha
Helix 50
50
A
1043 1069Right-handed alpha
Helix 51
51
A
1086 1096Right-handed alpha
Helix 52
52
A
1096 1105Right-handed alpha
Helix 53
53
A
1109 1123Right-handed alpha
Helix 54
54
A
1133 1143Right-handed alpha
Helix 55
55
A
1149 1157Right-handed alpha
Helix 56
56
A
1167 1179Right-handed alpha
Helix 57
57
A
1183 1195Right-handed alpha
Helix 58
58
A
1205 1216Right-handed alpha
Helix 59
59
A
1220 1232Right-handed alpha
Helix 60
60
A
1240 1246Right-handed alpha
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There are 5 sheets in PDB entry 2DJD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
58 60anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
482 483parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 959first strand
Strand 2
A
962 963anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1130 1131first strand
Strand 2
A
1165 1166anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1202 1204first strand
Strand 2
A
1237 1239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il