Analysis of interatomic Contacts of Structural Units in PDB entry:
2DJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DJL entry

There are 2 chains in PDB entry 2DJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0ILE 311
B
 MET 0ILE 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2DJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 34Right-handed alpha
Helix 2
2
A
76 85Right-handed alpha
Helix 3
3
A
103 120Right-handed alpha
Helix 4
4
A
139 141Right-handed 310
Helix 5
6
A
171 183Right-handed alpha
Helix 6
7
A
223 239Right-handed 310
Helix 7
8
A
254 263Right-handed alpha
Helix 8
9
A
271 277Right-handed alpha
Helix 9
10
A
279 296Right-handed 310
Helix 10
11
A
301 304Right-handed 310
Helix 11
12
B
26 34Right-handed alpha
Helix 12
13
B
76 85Right-handed alpha
Helix 13
14
B
103 120Right-handed alpha
Helix 14
15
B
139 141Right-handed 310
Helix 15
17
B
171 183Right-handed alpha
Helix 16
18
B
223 239Right-handed 310
Helix 17
19
B
254 263Right-handed alpha
Helix 18
20
B
271 277Right-handed alpha
Helix 19
21
B
279 296Right-handed 310
Helix 20
22
B
301 304Right-handed 310
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There are 8 sheets in PDB entry 2DJL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 11anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
268 270parallel
Strand 3
A
244 248parallel
Strand 4
A
189 192parallel
Strand 5
A
161 164parallel
Strand 6
A
123 127parallel
Strand 7
A
94 98parallel
Strand 8
A
40 42parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
219 221anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
207 209anti-parallel
Strand 3
B
308 310parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
9 11anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
268 270parallel
Strand 3
B
244 248parallel
Strand 4
B
189 192parallel
Strand 5
B
161 164parallel
Strand 6
B
123 127parallel
Strand 7
B
94 98parallel
Strand 8
B
40 42parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
219 221anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
207 209anti-parallel
Strand 3
A
308 310parallel
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