Analysis of interatomic Contacts of Structural Units in PDB entry:
2DKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DKB entry

There is 1 chain in PDB entry 2DKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LEU 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2DKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 16Right-handed alpha
Helix 2
2
A
62 72Right-handed alpha
Helix 3
3
A
85 97Right-handed alpha
Helix 4
4
A
111 126Right-handed alpha
Helix 5
5
A
143 147Right-handed alpha
Helix 6
6
A
185 199Right-handed alpha
Helix 7
7
A
225 235Right-handed alpha
Helix 8
8
A
257 261Right-handed alpha
Helix 9
9
A
287 296Right-handed alpha
Helix 10
10
A
308 323Right-handed alpha
Helix 11
11
A
326 347Right-handed alpha
Helix 12
12
A
378 389Right-handed alpha
Helix 13
13
A
415 431Right-handed alpha
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There are 3 sheets in PDB entry 2DKB. Click on sheet of interest to get list of strands forming it: S1, S2, S3,

There are 3 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
43 47anti-parallel
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There are 7 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
280 285anti-parallel
Strand 3
A
266 270anti-parallel
Strand 4
A
239 244parallel
Strand 5
A
204 209parallel
Strand 6
A
130 134parallel
Strand 7
A
163 167parallel
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There are 4 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 357first strand
Strand 2
A
360 366anti-parallel
Strand 3
A
403 407anti-parallel
Strand 4
A
394 396anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il