Analysis of interatomic Contacts of Structural Units in PDB entry:
2DKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DKK entry

There is 1 chain in PDB entry 2DKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13HIS 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2DKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 38Right-handed alpha
Helix 2
2
A
59 67Right-handed alpha
Helix 3
3
A
74 80Right-handed 310
Helix 4
4
A
102 112Right-handed alpha
Helix 5
5
A
113 115Right-handed 310
Helix 6
6
A
116 142Right-handed alpha
Helix 7
7
A
147 151Right-handed alpha
Helix 8
8
A
153 165Right-handed alpha
Helix 9
9
A
169 179Right-handed alpha
Helix 10
10
A
180 182Right-handed 310
Helix 11
11
A
188 208Right-handed alpha
Helix 12
12
A
216 227Right-handed alpha
Helix 13
13
A
234 245Right-handed alpha
Helix 14
14
A
245 263Right-handed alpha
Helix 15
15
A
263 273Right-handed alpha
Helix 16
16
A
277 288Right-handed alpha
Helix 17
17
A
320 325Right-handed alpha
Helix 18
18
A
358 377Right-handed alpha
Helix 19
19
A
385 389Right-handed 310
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There are 3 sheets in PDB entry 2DKK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
42 46parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
316 319parallel
Strand 5
A
298 300anti-parallel
Strand 6
A
72 73anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
404 406anti-parallel
Strand 3
A
381 382anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
309 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il