Analysis of interatomic Contacts of Structural Units in PDB entry:
2DLN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DLN entry

There is 1 chain in PDB entry 2DLN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2DLN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
15 34Right-handed alpha
Helix 2
H2
A
48 52Right-handed alpha
Helix 3
H3
A
71 79Right-handed alpha
Helix 4
H4
A
87 96Right-handed alpha
Helix 5
H5
A
98 107Right-handed alpha
Helix 6
H6
A
119 125Right-handed alpha
Helix 7
H7
A
128 137Right-handed alpha
Helix 8
H8
A
163 173Right-handed alpha
Helix 9
H9
A
212 217Right-handed alpha
Helix 10
H10
A
231 247Right-handed alpha
Helix 11
H11
A
282 289Right-handed alpha
Helix 12
H12
A
294 303Right-handed alpha
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There are 3 sheets in PDB entry 2DLN. Click on sheet of interest to get list of strands forming it: SN, CEN, SC,

There are 4 strands in SN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
4 11parallel
Strand 3
A
57 61parallel
Strand 4
A
83 85parallel
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There are 4 strands in CEN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
176 181anti-parallel
Strand 3
A
141 145anti-parallel
Strand 4
A
154 158anti-parallel
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There are 5 strands in SC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 272first strand
Strand 2
A
253 260anti-parallel
Strand 3
A
186 192anti-parallel
Strand 4
A
197 206anti-parallel
Strand 5
A
221 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il