Analysis of interatomic Contacts of Structural Units in PDB entry:
2DM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DM6 entry

There are 2 chains in PDB entry 2DM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -2ALA 329
B
 SER -4ALA 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2DM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
48 54Right-handed alpha
Helix 3
3
A
114 120Right-handed 310
Helix 4
4
A
123 135Right-handed alpha
Helix 5
5
A
152 165Right-handed alpha
Helix 6
6
A
175 185Right-handed alpha
Helix 7
7
A
198 207Right-handed alpha
Helix 8
8
A
219 228Right-handed alpha
Helix 9
9
A
241 245Right-handed 310
Helix 10
10
A
256 263Right-handed alpha
Helix 11
11
A
271 275Right-handed 310
Helix 12
12
A
277 293Right-handed alpha
Helix 13
13
A
308 318Right-handed alpha
Helix 14
14
B
18 20Right-handed 310
Helix 15
15
B
48 54Right-handed alpha
Helix 16
16
B
55 57Right-handed 310
Helix 17
17
B
114 120Right-handed 310
Helix 18
18
B
123 135Right-handed alpha
Helix 19
19
B
152 165Right-handed alpha
Helix 20
20
B
175 185Right-handed alpha
Helix 21
21
B
198 207Right-handed alpha
Helix 22
22
B
219 228Right-handed alpha
Helix 23
23
B
241 245Right-handed 310
Helix 24
24
B
256 263Right-handed alpha
Helix 25
25
B
271 275Right-handed 310
Helix 26
26
B
277 293Right-handed alpha
Helix 27
27
B
308 319Right-handed alpha
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There are 7 sheets in PDB entry 2DM6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 9first strand
Strand 2
A
22 28anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
37 45anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
84 87anti-parallel
Strand 5
A
102 104anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
37 45anti-parallel
Strand 3
A
324 328anti-parallel
Strand 4
A
300 304parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
168 173parallel
Strand 3
A
144 147parallel
Strand 4
A
211 216parallel
Strand 5
A
230 238parallel
Strand 6
A
266 269parallel
Strand 7
B
266 269anti-parallel
Strand 8
B
230 238parallel
Strand 9
B
211 216parallel
Strand 10
B
144 147parallel
Strand 11
B
168 173parallel
Strand 12
B
189 192parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
22 28anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
37 45anti-parallel
Strand 3
B
67 74anti-parallel
Strand 4
B
84 87anti-parallel
Strand 5
B
102 104anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
37 45anti-parallel
Strand 3
B
324 328anti-parallel
Strand 4
B
300 304parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il