Analysis of interatomic Contacts of Structural Units in PDB entry:
2DMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DMA entry

There is 1 chain in PDB entry 2DMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 81GLY 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2DMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 97Right-handed alpha
Helix 2
2
A
98 118Right-handed alpha
Helix 3
3
A
127 137Right-handed alpha
Helix 4
4
A
137 146Right-handed alpha
Helix 5
5
A
177 184Right-handed alpha
Helix 6
6
A
184 198Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2DMA.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
121 125parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
172 176anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il