Analysis of interatomic Contacts of Structural Units in PDB entry:
2DOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DOR entry

There are 2 chains in PDB entry 2DOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 311
B
 MET 1LEU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2DOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 34Right-handed alpha
Helix 2
2
A
76 88Right-handed alpha
Helix 3
3
A
105 117Right-handed alpha
Helix 4
4
A
139 141Right-handed 310
Helix 5
5
A
143 155Right-handed alpha
Helix 6
6
A
171 183Right-handed alpha
Helix 7
7
A
212 215Right-handed 310
Helix 8
8
A
222 236Right-handed 310
Helix 9
9
A
254 263Right-handed alpha
Helix 10
10
A
272 277Right-handed alpha
Helix 11
11
A
279 296Right-handed 310
Helix 12
12
A
301 303Right-handed 310
Helix 13
13
B
26 34Right-handed alpha
Helix 14
14
B
76 88Right-handed alpha
Helix 15
15
B
105 117Right-handed alpha
Helix 16
16
B
139 141Right-handed 310
Helix 17
17
B
143 155Right-handed alpha
Helix 18
18
B
171 183Right-handed alpha
Helix 19
19
B
212 215Right-handed 310
Helix 20
20
B
222 236Right-handed 310
Helix 21
21
B
254 263Right-handed alpha
Helix 22
22
B
272 277Right-handed alpha
Helix 23
23
B
279 296Right-handed 310
Helix 24
24
B
301 303Right-handed 310
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There are 6 sheets in PDB entry 2DOR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 11anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
267 270parallel
Strand 3
A
244 248parallel
Strand 4
A
188 191parallel
Strand 5
A
161 164parallel
Strand 6
A
123 127parallel
Strand 7
A
97 100parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
218 220anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
9 11anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
267 270parallel
Strand 3
B
244 248parallel
Strand 4
B
188 191parallel
Strand 5
B
161 164parallel
Strand 6
B
123 127parallel
Strand 7
B
97 100parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
218 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il