Analysis of interatomic Contacts of Structural Units in PDB entry:
2DP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DP3 entry

There is 1 chain in PDB entry 2DP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ARG 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2DP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
44 46Right-handed 310
Helix 3
3
A
47 55Right-handed alpha
Helix 4
4
A
80 87Right-handed alpha
Helix 5
5
A
96 102Right-handed alpha
Helix 6
6
A
106 120Right-handed alpha
Helix 7
7
A
131 137Right-handed alpha
Helix 8
8
A
139 156Right-handed alpha
Helix 9
9
A
158 163Right-handed 310
Helix 10
10
A
171 175Right-handed 310
Helix 11
11
A
182 201Right-handed alpha
Helix 12
12
A
202 209Right-handed alpha
Helix 13
13
A
221 227Right-handed alpha
Helix 14
14
A
237 242Right-handed 310
Helix 15
15
A
243 256Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2DP3.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
38 42parallel
Strand 3
A
61 64parallel
Strand 4
A
91 94parallel
Strand 5
A
123 128parallel
Strand 6
A
165 169parallel
Strand 7
A
210 214parallel
Strand 8
A
233 236parallel
Strand 9
A
7 11parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il