Analysis of interatomic Contacts of Structural Units in PDB entry:
2DP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DP6 entry

There are 4 chains in PDB entry 2DP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 C 7
C
 T 9 C 15
D
 G 1 A 14
A
 MET 1LEU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2DP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
16 26Right-handed alpha
Helix 3
3
A
30 34Right-handed 310
Helix 4
4
A
64 69Right-handed alpha
Helix 5
5
A
75 88Right-handed alpha
Helix 6
6
A
117 121Right-handed 310
Helix 7
7
A
123 140Right-handed alpha
Helix 8
8
A
151 162Right-handed alpha
Helix 9
9
A
165 169Right-handed 310
Helix 10
10
A
192 197Right-handed alpha
Helix 11
11
A
202 218Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2DP6.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
53 57parallel
Strand 4
A
146 150parallel
Strand 5
A
183 188parallel
Strand 6
A
176 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il