Analysis of interatomic Contacts of Structural Units in PDB entry:
2DPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DPG entry

There is 1 chain in PDB entry 2DPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLY 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2DPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
16 31Right-handed alpha
Helix 2
B
A
51 65Right-handed alpha
Helix 3
B'
A
69 76Right-handed alpha
Helix 4
C
A
92 105Right-handed alpha
Helix 5
D
A
120 132Right-handed alpha
Helix 6
E
A
154 164Right-handed alpha
Helix 7
F'
A
178 181Right-handed 310
Helix 8
F
A
183 193Right-handed alpha
Helix 9
G
A
196 199Right-handed alpha
Helix 10
H
A
224 230Right-handed alpha
Helix 11
I
A
232 249Right-handed alpha
Helix 12
J
A
258 269Right-handed alpha
Helix 13
K
A
277 283Right-handed alpha
Helix 14
L
A
405 410Right-handed alpha
Helix 15
M
A
414 424Right-handed alpha
Helix 16
N
A
433 451Right-handed alpha
Helix 17
O
A
468 474Right-handed alpha
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There are 2 sheets in PDB entry 2DPG. Click on sheet of interest to get list of strands forming it: COE, DIM,

There are 6 strands in COE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
38 45parallel
Strand 3
A
6 11parallel
Strand 4
A
111 116parallel
Strand 5
A
141 146parallel
Strand 6
A
172 175parallel
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There are 9 strands in DIM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 402first strand
Strand 2
A
378 386anti-parallel
Strand 3
A
368 374anti-parallel
Strand 4
A
344 351anti-parallel
Strand 5
A
207 215anti-parallel
Strand 6
A
332 337parallel
Strand 7
A
315 320anti-parallel
Strand 8
A
284 289anti-parallel
Strand 9
A
457 460parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il