Analysis of interatomic Contacts of Structural Units in PDB entry:
2DPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DPN entry

There are 2 chains in PDB entry 2DPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3GLU 494
B
 PHE 3GLU 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2DPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 65Right-handed alpha
Helix 2
2
A
68 72Right-handed 310
Helix 3
3
A
106 116Right-handed alpha
Helix 4
4
A
118 126Right-handed alpha
Helix 5
5
A
134 146Right-handed alpha
Helix 6
6
A
148 155Right-handed alpha
Helix 7
7
A
162 172Right-handed alpha
Helix 8
8
A
180 185Right-handed alpha
Helix 9
9
A
198 205Right-handed alpha
Helix 10
10
A
226 231Right-handed alpha
Helix 11
11
A
242 250Right-handed alpha
Helix 12
12
A
306 316Right-handed alpha
Helix 13
13
A
324 331Right-handed alpha
Helix 14
14
A
368 393Right-handed alpha
Helix 15
15
A
406 410Right-handed 310
Helix 16
16
A
411 423Right-handed alpha
Helix 17
17
A
433 447Right-handed alpha
Helix 18
18
A
451 459Right-handed alpha
Helix 19
19
A
470 489Right-handed alpha
Helix 20
20
B
46 66Right-handed alpha
Helix 21
21
B
106 116Right-handed alpha
Helix 22
22
B
118 124Right-handed alpha
Helix 23
23
B
134 146Right-handed alpha
Helix 24
24
B
148 153Right-handed alpha
Helix 25
25
B
163 172Right-handed alpha
Helix 26
26
B
180 186Right-handed alpha
Helix 27
27
B
198 205Right-handed alpha
Helix 28
28
B
226 231Right-handed alpha
Helix 29
29
B
242 250Right-handed alpha
Helix 30
30
B
307 315Right-handed alpha
Helix 31
31
B
324 329Right-handed alpha
Helix 32
32
B
330 332Right-handed 310
Helix 33
33
B
368 394Right-handed alpha
Helix 34
34
B
406 410Right-handed 310
Helix 35
35
B
411 423Right-handed alpha
Helix 36
36
B
433 447Right-handed alpha
Helix 37
37
B
452 457Right-handed alpha
Helix 38
38
B
470 487Right-handed alpha
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There are 11 sheets in PDB entry 2DPN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 32first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
4 9anti-parallel
Strand 4
A
74 79parallel
Strand 5
A
236 241parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
44 45anti-parallel
Strand 3
A
98 99anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
158 161anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
214 215parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
196 197anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 291first strand
Strand 2
A
294 303anti-parallel
Strand 3
A
266 271anti-parallel
Strand 4
A
258 262anti-parallel
Strand 5
A
402 405parallel
Strand 6
A
426 429parallel
Strand 7
A
461 465anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
358 363anti-parallel
Strand 3
B
358 363anti-parallel
Strand 4
B
339 341anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 32first strand
Strand 2
B
13 19anti-parallel
Strand 3
B
4 9anti-parallel
Strand 4
B
74 79parallel
Strand 5
B
236 241parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
98 99anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
84 88anti-parallel
Strand 3
B
158 162anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 291first strand
Strand 2
B
294 303anti-parallel
Strand 3
B
266 273anti-parallel
Strand 4
B
258 262anti-parallel
Strand 5
B
402 405parallel
Strand 6
B
426 429parallel
Strand 7
B
461 465anti-parallel
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