Analysis of interatomic Contacts of Structural Units in PDB entry:
2DPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DPW entry

There is 1 chain in PDB entry 2DPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1VAL 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2DPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
23 26Right-handed 310
Helix 3
3
A
34 45Right-handed alpha
Helix 4
4
A
71 82Right-handed alpha
Helix 5
5
A
98 109Right-handed alpha
Helix 6
6
A
121 128Right-handed alpha
Helix 7
7
A
153 157Right-handed alpha
Helix 8
8
A
159 169Right-handed alpha
Helix 9
9
A
172 181Right-handed alpha
Helix 10
10
A
181 190Right-handed alpha
Helix 11
11
A
194 207Right-handed alpha
Helix 12
12
A
217 221Right-handed 310
Helix 13
13
A
226 231Right-handed alpha
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There are 3 sheets in PDB entry 2DPW. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
48 52parallel
Strand 3
A
4 8parallel
Strand 4
A
86 91parallel
Strand 5
A
148 152anti-parallel
Strand 6
A
114 120anti-parallel
Strand 7
A
141 145anti-parallel
Strand 8
A
136 138anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
48 52parallel
Strand 3
A
4 8parallel
Strand 4
A
86 91parallel
Strand 5
A
148 152anti-parallel
Strand 6
A
114 120anti-parallel
Strand 7
A
210 214parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
32 33anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il