Analysis of interatomic Contacts of Structural Units in PDB entry:
2DSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DSJ entry

There are 2 chains in PDB entry 2DSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 423
B
 MET 1ILE 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2DSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
17 30Right-handed alpha
Helix 3
3
A
34 49Right-handed alpha
Helix 4
4
A
51 64Right-handed alpha
Helix 5
5
A
90 100Right-handed alpha
Helix 6
6
A
118 124Right-handed alpha
Helix 7
7
A
134 145Right-handed alpha
Helix 8
8
A
152 156Right-handed 310
Helix 9
9
A
157 169Right-handed alpha
Helix 10
10
A
175 191Right-handed alpha
Helix 11
11
A
209 227Right-handed alpha
Helix 12
12
A
248 260Right-handed alpha
Helix 13
13
A
264 282Right-handed alpha
Helix 14
14
A
287 295Right-handed alpha
Helix 15
15
A
296 309Right-handed alpha
Helix 16
16
A
312 317Right-handed 310
Helix 17
17
A
318 322Right-handed 310
Helix 18
18
A
342 354Right-handed alpha
Helix 19
19
A
395 406Right-handed alpha
Helix 20
20
B
2 12Right-handed alpha
Helix 21
21
B
17 30Right-handed alpha
Helix 22
22
B
34 49Right-handed alpha
Helix 23
23
B
51 64Right-handed alpha
Helix 24
24
B
89 100Right-handed alpha
Helix 25
25
B
118 124Right-handed alpha
Helix 26
26
B
134 145Right-handed alpha
Helix 27
27
B
157 168Right-handed alpha
Helix 28
28
B
175 191Right-handed alpha
Helix 29
29
B
205 228Right-handed alpha
Helix 30
30
B
248 260Right-handed alpha
Helix 31
31
B
264 282Right-handed alpha
Helix 32
32
B
287 295Right-handed alpha
Helix 33
33
B
296 309Right-handed alpha
Helix 34
34
B
312 317Right-handed 310
Helix 35
35
B
318 322Right-handed 310
Helix 36
36
B
342 354Right-handed alpha
Helix 37
37
B
395 406Right-handed alpha
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There are 7 sheets in PDB entry 2DSJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
194 201parallel
Strand 3
A
230 237parallel
Strand 4
A
419 423anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
147 150parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
369 372anti-parallel
Strand 3
A
385 391anti-parallel
Strand 4
A
326 331anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
336 341anti-parallel
Strand 3
A
407 410anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 151first strand
Strand 2
B
104 109parallel
Strand 3
B
77 83parallel
Strand 4
B
194 200parallel
Strand 5
B
230 236parallel
Strand 6
B
419 423anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 247first strand
Strand 2
B
369 372anti-parallel
Strand 3
B
385 391anti-parallel
Strand 4
B
326 331anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 380first strand
Strand 2
B
336 341anti-parallel
Strand 3
B
407 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il