Analysis of interatomic Contacts of Structural Units in PDB entry:
2DSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DSV entry

There is 1 chain in PDB entry 2DSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1VAL 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2DSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
15 19Right-handed 310
Helix 3
3
A
21 25Right-handed 310
Helix 4
4
A
51 66Right-handed alpha
Helix 5
5
A
81 90Right-handed alpha
Helix 6
6
A
91 109Right-handed alpha
Helix 7
7
A
125 145Right-handed alpha
Helix 8
8
A
160 168Right-handed alpha
Helix 9
9
A
169 177Right-handed alpha
Helix 10
10
A
215 226Right-handed alpha
Helix 11
11
A
229 231Right-handed 310
Helix 12
12
A
275 282Right-handed alpha
Helix 13
13
A
309 323Right-handed alpha
Helix 14
14
A
332 336Right-handed 310
Helix 15
15
A
349 361Right-handed alpha
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There are 3 sheets in PDB entry 2DSV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
70 76parallel
Strand 4
A
113 117parallel
Strand 5
A
152 157parallel
Strand 6
A
179 182parallel
Strand 7
A
233 238parallel
Strand 8
A
327 331parallel
Strand 9
A
2 8parallel
Strand 10
A
32 41parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
240 246anti-parallel
Strand 3
A
272 274anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
240 246anti-parallel
Strand 3
A
303 306anti-parallel
Strand 4
A
295 300anti-parallel
Strand 5
A
286 290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il