Analysis of interatomic Contacts of Structural Units in PDB entry:
2DT5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DT5 entry

There are 2 chains in PDB entry 2DT5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 211
B
 MET 1GLY 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 2DT5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 24Right-handed alpha
Helix 2
2
A
30 39Right-handed alpha
Helix 3
3
A
41 52Right-handed alpha
Helix 4
4
A
64 75Right-handed alpha
Helix 5
5
A
89 98Right-handed alpha
Helix 6
6
A
132 137Right-handed alpha
Helix 7
7
A
149 164Right-handed alpha
Helix 8
8
A
189 202Right-handed alpha
Helix 9
9
A
206 211Right-handed 310
Helix 10
10
B
6 24Right-handed alpha
Helix 11
11
B
30 38Right-handed alpha
Helix 12
12
B
41 52Right-handed alpha
Helix 13
13
B
64 75Right-handed alpha
Helix 14
14
B
89 97Right-handed alpha
Helix 15
15
B
131 136Right-handed 310
Helix 16
16
B
149 151Right-handed 310
Helix 17
17
B
152 164Right-handed alpha
Helix 18
18
B
191 202Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2DT5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
125 129anti-parallel
Strand 3
A
105 112parallel
Strand 4
A
81 86parallel
Strand 5
A
143 146parallel
Strand 6
A
167 170parallel
Strand 7
A
183 186parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
105 112parallel
Strand 3
B
81 86parallel
Strand 4
B
143 146parallel
Strand 5
B
167 170parallel
Strand 6
B
183 186parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
125 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il