Analysis of interatomic Contacts of Structural Units in PDB entry:
2DT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DT8 entry

There is 1 chain in PDB entry 2DT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2DT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
14 19Right-handed alpha
Helix 3
3
A
44 54Right-handed alpha
Helix 4
4
A
65 77Right-handed alpha
Helix 5
5
A
94 104Right-handed alpha
Helix 6
6
A
119 136Right-handed alpha
Helix 7
7
A
138 152Right-handed alpha
Helix 8
8
A
162 169Right-handed alpha
Helix 9
9
A
171 178Right-handed 310
Helix 10
10
A
203 220Right-handed alpha
Helix 11
11
A
235 248Right-handed alpha
Helix 12
12
A
261 269Right-handed alpha
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There are 4 sheets in PDB entry 2DT8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
3 8parallel
Strand 3
A
82 87parallel
Strand 4
A
110 114parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
60 62anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 158first strand
Strand 2
A
273 279anti-parallel
Strand 3
A
225 231anti-parallel
Strand 4
A
252 259parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
194 201anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il