Analysis of interatomic Contacts of Structural Units in PDB entry:
2DU3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DU3 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 2DU3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 G 901 C 971
A
 MET 1GLU 534
B
 MET 1GLU 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 2DU3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 15Right-handed alpha
Helix 2
2
A
15 23Right-handed alpha
Helix 3
3
A
24 27Right-handed 310
Helix 4
4
A
31 35Right-handed 310
Helix 5
5
A
47 63Right-handed alpha
Helix 6
6
A
76 84Right-handed alpha
Helix 7
7
A
86 92Right-handed alpha
Helix 8
8
A
106 110Right-handed 310
Helix 9
9
A
133 138Right-handed alpha
Helix 10
10
A
141 145Right-handed 310
Helix 11
11
A
155 158Right-handed 310
Helix 12
12
A
159 166Right-handed alpha
Helix 13
13
A
186 197Right-handed alpha
Helix 14
14
A
242 255Right-handed alpha
Helix 15
15
A
256 258Right-handed 310
Helix 16
16
A
310 316Right-handed alpha
Helix 17
17
A
330 338Right-handed alpha
Helix 18
18
A
342 348Right-handed alpha
Helix 19
19
A
358 366Right-handed alpha
Helix 20
20
A
374 391Right-handed alpha
Helix 21
21
A
447 449Right-handed 310
Helix 22
22
A
450 457Right-handed alpha
Helix 23
23
A
464 480Right-handed alpha
Helix 24
24
A
496 500Right-handed 310
Helix 25
25
A
505 515Right-handed alpha
Helix 26
26
B
4 15Right-handed alpha
Helix 27
27
B
15 23Right-handed alpha
Helix 28
28
B
24 27Right-handed 310
Helix 29
29
B
31 35Right-handed 310
Helix 30
30
B
47 63Right-handed alpha
Helix 31
31
B
76 84Right-handed alpha
Helix 32
32
B
86 92Right-handed alpha
Helix 33
33
B
187 197Right-handed alpha
Helix 34
34
B
242 256Right-handed alpha
Helix 35
35
B
287 290Right-handed 310
Helix 36
36
B
294 298Right-handed 310
Helix 37
37
B
310 316Right-handed alpha
Helix 38
38
B
330 339Right-handed alpha
Helix 39
39
B
342 348Right-handed alpha
Helix 40
40
B
358 365Right-handed alpha
Helix 41
41
B
374 392Right-handed alpha
Helix 42
42
B
447 449Right-handed 310
Helix 43
43
B
450 457Right-handed alpha
Helix 44
44
B
464 481Right-handed alpha
Helix 45
45
B
497 500Right-handed 310
Helix 46
46
B
505 515Right-handed alpha
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There are 9 sheets in PDB entry 2DU3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
206 215parallel
Strand 3
A
228 237anti-parallel
Strand 4
A
323 329anti-parallel
Strand 5
A
298 308anti-parallel
Strand 6
A
280 290anti-parallel
Strand 7
A
261 266anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
177 183anti-parallel
Strand 3
A
96 99anti-parallel
Strand 4
B
96 99anti-parallel
Strand 5
B
177 183anti-parallel
Strand 6
B
73 75anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 368first strand
Strand 2
A
502 503anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 406first strand
Strand 2
A
411 418anti-parallel
Strand 3
A
523 533anti-parallel
Strand 4
A
486 494anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 463first strand
Strand 2
A
433 437anti-parallel
Strand 3
A
440 444anti-parallel
Strand 4
A
519 520parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
206 215parallel
Strand 3
B
228 237anti-parallel
Strand 4
B
323 329anti-parallel
Strand 5
B
300 308anti-parallel
Strand 6
B
280 285anti-parallel
Strand 7
B
261 266anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 368first strand
Strand 2
B
502 503anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 407first strand
Strand 2
B
410 418anti-parallel
Strand 3
B
523 533anti-parallel
Strand 4
B
486 494anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 463first strand
Strand 2
B
433 437anti-parallel
Strand 3
B
440 444anti-parallel
Strand 4
B
519 520parallel
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