Analysis of interatomic Contacts of Structural Units in PDB entry:
2DU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DU6 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 2DU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 G 901 C 971
A
 MET 1GLU 534
B
 MET 1GLU 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2DU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed alpha
Helix 2
2
A
15 21Right-handed alpha
Helix 3
3
A
22 26Right-handed 310
Helix 4
4
A
47 62Right-handed alpha
Helix 5
5
A
78 83Right-handed alpha
Helix 6
6
A
86 92Right-handed alpha
Helix 7
7
A
106 114Right-handed 310
Helix 8
8
A
134 139Right-handed alpha
Helix 9
9
A
159 164Right-handed alpha
Helix 10
10
A
187 197Right-handed alpha
Helix 11
11
A
242 255Right-handed alpha
Helix 12
12
A
256 258Right-handed 310
Helix 13
13
A
287 290Right-handed 310
Helix 14
14
A
310 316Right-handed alpha
Helix 15
15
A
330 339Right-handed alpha
Helix 16
16
A
342 348Right-handed alpha
Helix 17
17
A
358 365Right-handed alpha
Helix 18
18
A
374 391Right-handed alpha
Helix 19
19
A
427 431Right-handed 310
Helix 20
20
A
450 457Right-handed alpha
Helix 21
21
A
464 480Right-handed alpha
Helix 22
22
A
497 500Right-handed 310
Helix 23
23
A
505 515Right-handed alpha
Helix 24
24
B
4 12Right-handed alpha
Helix 25
25
B
15 21Right-handed alpha
Helix 26
26
B
22 26Right-handed 310
Helix 27
27
B
31 35Right-handed 310
Helix 28
28
B
47 62Right-handed alpha
Helix 29
29
B
76 84Right-handed alpha
Helix 30
30
B
86 94Right-handed alpha
Helix 31
31
B
187 197Right-handed alpha
Helix 32
32
B
217 221Right-handed 310
Helix 33
33
B
243 256Right-handed alpha
Helix 34
34
B
310 317Right-handed alpha
Helix 35
35
B
329 339Right-handed alpha
Helix 36
36
B
342 348Right-handed alpha
Helix 37
37
B
358 365Right-handed alpha
Helix 38
38
B
374 392Right-handed alpha
Helix 39
39
B
450 455Right-handed alpha
Helix 40
40
B
464 481Right-handed alpha
Helix 41
41
B
497 501Right-handed 310
Helix 42
42
B
505 515Right-handed alpha
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There are 12 sheets in PDB entry 2DU6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
206 215parallel
Strand 3
A
228 237anti-parallel
Strand 4
A
323 329anti-parallel
Strand 5
A
300 308anti-parallel
Strand 6
A
280 285anti-parallel
Strand 7
A
261 266anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
181 183anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
B
96 99anti-parallel
Strand 3
B
177 178anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
502 504anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
410 417anti-parallel
Strand 3
A
528 534anti-parallel
Strand 4
A
487 489anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 463first strand
Strand 2
A
433 437anti-parallel
Strand 3
A
440 444anti-parallel
Strand 4
A
519 520parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 494first strand
Strand 2
A
523 524anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
206 215parallel
Strand 3
B
228 237anti-parallel
Strand 4
B
324 328anti-parallel
Strand 5
B
300 308anti-parallel
Strand 6
B
280 285anti-parallel
Strand 7
B
261 266anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
181 183anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 407first strand
Strand 2
B
410 416anti-parallel
Strand 3
B
529 533anti-parallel
Strand 4
B
486 489anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 463first strand
Strand 2
B
432 437anti-parallel
Strand 3
B
440 445anti-parallel
Strand 4
B
519 520parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
493 494first strand
Strand 2
B
523 524anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il