Analysis of interatomic Contacts of Structural Units in PDB entry:
2DUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DUB entry

There are 6 chains in PDB entry 2DUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 32HIS 290
B
 ASN 32HIS 290
C
 ASN 32HIS 290
D
 ALA 31HIS 290
E
 ALA 31HIS 290
F
 ALA 31HIS 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 2DUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 45Right-handed 310
Helix 2
2
A
55 57Right-handed 310
Helix 3
3
A
63 78Right-handed alpha
Helix 4
4
A
100 103Right-handed alpha
Helix 5
5
A
108 111Right-handed alpha
Helix 6
6
A
122 125Right-handed 310
Helix 7
7
A
140 148Right-handed 310
Helix 8
8
A
163 167Right-handed 310
Helix 9
9
A
178 183Right-handed alpha
Helix 10
10
A
185 194Right-handed alpha
Helix 11
11
A
200 206Right-handed alpha
Helix 12
12
A
218 231Right-handed alpha
Helix 13
13
A
234 248Right-handed alpha
Helix 14
14
A
252 268Right-handed alpha
Helix 15
15
A
270 280Right-handed alpha
Helix 16
16
B
43 45Right-handed 310
Helix 17
17
B
55 57Right-handed 310
Helix 18
18
B
63 78Right-handed alpha
Helix 19
19
B
100 103Right-handed alpha
Helix 20
20
B
108 112Right-handed alpha
Helix 21
21
B
122 125Right-handed 310
Helix 22
22
B
140 148Right-handed 310
Helix 23
23
B
163 167Right-handed 310
Helix 24
24
B
178 183Right-handed alpha
Helix 25
25
B
185 194Right-handed alpha
Helix 26
26
B
200 206Right-handed alpha
Helix 27
27
B
218 231Right-handed alpha
Helix 28
28
B
234 248Right-handed alpha
Helix 29
29
B
252 268Right-handed alpha
Helix 30
30
B
270 280Right-handed alpha
Helix 31
31
C
43 45Right-handed 310
Helix 32
32
C
55 57Right-handed 310
Helix 33
33
C
63 78Right-handed alpha
Helix 34
34
C
100 103Right-handed alpha
Helix 35
35
C
108 111Right-handed alpha
Helix 36
36
C
122 125Right-handed 310
Helix 37
37
C
140 148Right-handed 310
Helix 38
38
C
163 167Right-handed 310
Helix 39
39
C
178 183Right-handed alpha
Helix 40
40
C
185 194Right-handed alpha
Helix 41
41
C
200 206Right-handed alpha
Helix 42
42
C
218 231Right-handed alpha
Helix 43
43
C
234 248Right-handed alpha
Helix 44
44
C
252 268Right-handed alpha
Helix 45
45
C
270 280Right-handed alpha
Helix 46
46
D
43 45Right-handed 310
Helix 47
47
D
55 57Right-handed 310
Helix 48
48
D
63 78Right-handed alpha
Helix 49
49
D
100 103Right-handed alpha
Helix 50
50
D
108 114Right-handed alpha
Helix 51
51
D
122 125Right-handed 310
Helix 52
52
D
140 148Right-handed 310
Helix 53
53
D
163 167Right-handed 310
Helix 54
54
D
175 183Right-handed alpha
Helix 55
55
D
185 194Right-handed alpha
Helix 56
56
D
200 206Right-handed alpha
Helix 57
57
D
218 231Right-handed alpha
Helix 58
58
D
234 248Right-handed alpha
Helix 59
59
D
252 268Right-handed alpha
Helix 60
60
D
270 280Right-handed alpha
Helix 61
61
E
43 45Right-handed 310
Helix 62
62
E
55 57Right-handed 310
Helix 63
63
E
63 78Right-handed alpha
Helix 64
64
E
100 103Right-handed alpha
Helix 65
65
E
108 112Right-handed alpha
Helix 66
66
E
122 125Right-handed 310
Helix 67
67
E
141 148Right-handed alpha
Helix 68
68
E
163 167Right-handed 310
Helix 69
69
E
178 183Right-handed alpha
Helix 70
70
E
185 194Right-handed alpha
Helix 71
71
E
200 206Right-handed alpha
Helix 72
72
E
218 231Right-handed alpha
Helix 73
73
E
234 248Right-handed alpha
Helix 74
74
E
252 268Right-handed alpha
Helix 75
75
E
270 280Right-handed alpha
Helix 76
76
F
43 45Right-handed 310
Helix 77
77
F
55 57Right-handed 310
Helix 78
78
F
63 78Right-handed alpha
Helix 79
79
F
100 103Right-handed alpha
Helix 80
80
F
108 112Right-handed alpha
Helix 81
81
F
122 125Right-handed 310
Helix 82
82
F
140 148Right-handed 310
Helix 83
83
F
163 167Right-handed 310
Helix 84
84
F
178 183Right-handed alpha
Helix 85
85
F
185 194Right-handed alpha
Helix 86
86
F
200 206Right-handed alpha
Helix 87
87
F
218 231Right-handed alpha
Helix 88
88
F
234 248Right-handed alpha
Helix 89
89
F
252 268Right-handed alpha
Helix 90
90
F
270 280Right-handed alpha
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There are 12 sheets in PDB entry 2DUB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
84 88parallel
Strand 4
A
129 134parallel
Strand 5
A
151 155parallel
Strand 6
A
211 213parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
159 161parallel
Strand 3
A
197 199anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
84 88parallel
Strand 4
B
129 134parallel
Strand 5
B
151 155parallel
Strand 6
B
211 213parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
159 161parallel
Strand 3
B
197 199anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 41first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
84 88parallel
Strand 4
C
129 134parallel
Strand 5
C
151 155parallel
Strand 6
C
211 213parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 139first strand
Strand 2
C
159 161parallel
Strand 3
C
197 199anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 41first strand
Strand 2
D
47 52anti-parallel
Strand 3
D
84 88parallel
Strand 4
D
129 134parallel
Strand 5
D
151 155parallel
Strand 6
D
211 213parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
137 139first strand
Strand 2
D
159 161parallel
Strand 3
D
197 199anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
36 41first strand
Strand 2
E
47 52anti-parallel
Strand 3
E
84 88parallel
Strand 4
E
129 134parallel
Strand 5
E
151 155parallel
Strand 6
E
211 213parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
137 139first strand
Strand 2
E
159 161parallel
Strand 3
E
197 199anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
36 41first strand
Strand 2
F
47 52anti-parallel
Strand 3
F
84 88parallel
Strand 4
F
129 134parallel
Strand 5
F
151 155parallel
Strand 6
F
211 213parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
137 139first strand
Strand 2
F
159 161parallel
Strand 3
F
197 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il