Analysis of interatomic Contacts of Structural Units in PDB entry:
2DV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2DV6 entry

There are 6 chains in PDB entry 2DV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 24	ALA 445
B	HIS 24	ALA 445
C	HIS 24	ALA 445
D	HIS 24	ALA 445
E	HIS 24	ALA 445
F	HIS 24	ALA 445

There are 42 helices in PDB entry 2DV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	46	50	Right-handed 310
Helix 2	2	A	118	123	Right-handed alpha
Helix 3	3	A	228	236	Right-handed 310
Helix 4	4	A	264	271	Right-handed alpha
Helix 5	5	A	314	320	Right-handed alpha
Helix 6	6	A	376	379	Right-handed 310
Helix 7	7	A	417	424	Right-handed 310
Helix 8	8	B	46	50	Right-handed 310
Helix 9	9	B	228	236	Right-handed 310
Helix 10	10	B	264	271	Right-handed alpha
Helix 11	11	B	314	320	Right-handed alpha
Helix 12	12	B	376	379	Right-handed 310
Helix 13	13	B	417	424	Right-handed 310
Helix 14	14	C	46	50	Right-handed 310
Helix 15	15	C	118	123	Right-handed alpha
Helix 16	16	C	228	236	Right-handed 310
Helix 17	17	C	264	271	Right-handed alpha
Helix 18	18	C	314	320	Right-handed alpha
Helix 19	19	C	376	379	Right-handed 310
Helix 20	20	C	417	424	Right-handed 310
Helix 21	21	D	46	50	Right-handed 310
Helix 22	22	D	118	123	Right-handed alpha
Helix 23	23	D	228	236	Right-handed 310
Helix 24	24	D	264	271	Right-handed alpha
Helix 25	25	D	314	320	Right-handed alpha
Helix 26	26	D	376	379	Right-handed 310
Helix 27	27	D	417	424	Right-handed 310
Helix 28	28	E	46	50	Right-handed 310
Helix 29	29	E	118	123	Right-handed alpha
Helix 30	30	E	228	231	Right-handed 310
Helix 31	31	E	232	237	Right-handed alpha
Helix 32	32	E	264	271	Right-handed alpha
Helix 33	33	E	314	320	Right-handed alpha
Helix 34	34	E	376	379	Right-handed 310
Helix 35	35	E	417	424	Right-handed 310
Helix 36	36	F	46	50	Right-handed 310
Helix 37	37	F	118	123	Right-handed alpha
Helix 38	38	F	228	236	Right-handed 310
Helix 39	39	F	264	271	Right-handed alpha
Helix 40	40	F	314	320	Right-handed alpha
Helix 41	41	F	376	379	Right-handed 310
Helix 42	42	F	417	424	Right-handed 310

There are 36 sheets in PDB entry 2DV6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	45	first strand
Strand 2	A	27	36	anti-parallel
Strand 3	A	64	70	parallel
Strand 4	A	97	103	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	125	131	parallel
Strand 3	A	108	113	anti-parallel
Strand 4	A	80	81	anti-parallel
Strand 5	A	86	87	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	181	188	parallel
Strand 3	A	163	178	anti-parallel
Strand 4	A	204	211	parallel
Strand 5	A	243	249	anti-parallel
Strand 6	C	440	442	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	274	280	parallel
Strand 3	A	254	259	anti-parallel
Strand 4	A	222	223	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	290	299	anti-parallel
Strand 3	A	348	357	parallel
Strand 4	A	397	404	anti-parallel
Strand 5	A	371	374	anti-parallel
Strand 6	A	385	388	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	427	431	parallel
Strand 3	A	409	415	anti-parallel
Strand 4	A	362	367	anti-parallel
Strand 5	A	390	393	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	B	243	249	anti-parallel
Strand 3	B	204	211	anti-parallel
Strand 4	B	163	178	parallel
Strand 5	B	181	188	anti-parallel
Strand 6	B	309	310	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	45	first strand
Strand 2	B	27	36	anti-parallel
Strand 3	B	64	70	parallel
Strand 4	B	97	103	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	125	131	parallel
Strand 3	B	108	113	anti-parallel
Strand 4	B	80	81	anti-parallel
Strand 5	B	86	87	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	200	first strand
Strand 2	B	274	280	parallel
Strand 3	B	254	259	anti-parallel
Strand 4	B	222	223	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	290	299	anti-parallel
Strand 3	B	348	357	parallel
Strand 4	B	397	404	anti-parallel
Strand 5	B	371	374	anti-parallel
Strand 6	B	385	388	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	427	431	parallel
Strand 3	B	409	415	anti-parallel
Strand 4	B	362	367	anti-parallel
Strand 5	B	390	393	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	C	243	249	anti-parallel
Strand 3	C	204	211	anti-parallel
Strand 4	C	163	178	parallel
Strand 5	C	181	188	anti-parallel
Strand 6	C	309	310	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	45	first strand
Strand 2	C	27	36	anti-parallel
Strand 3	C	64	70	parallel
Strand 4	C	97	103	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	125	131	parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	80	81	anti-parallel
Strand 5	C	86	87	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	200	first strand
Strand 2	C	274	280	parallel
Strand 3	C	254	259	anti-parallel
Strand 4	C	222	223	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	290	299	anti-parallel
Strand 3	C	348	357	parallel
Strand 4	C	397	404	anti-parallel
Strand 5	C	371	374	anti-parallel
Strand 6	C	385	388	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	344	first strand
Strand 2	C	427	432	parallel
Strand 3	C	409	415	anti-parallel
Strand 4	C	362	367	anti-parallel
Strand 5	C	390	393	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	45	first strand
Strand 2	D	27	36	anti-parallel
Strand 3	D	64	70	parallel
Strand 4	D	97	103	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	125	131	parallel
Strand 3	D	108	113	anti-parallel
Strand 4	D	80	81	anti-parallel
Strand 5	D	86	87	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	310	first strand
Strand 2	D	181	188	parallel
Strand 3	D	163	178	anti-parallel
Strand 4	D	204	211	parallel
Strand 5	D	243	249	anti-parallel
Strand 6	F	440	442	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	200	first strand
Strand 2	D	274	280	parallel
Strand 3	D	254	259	anti-parallel
Strand 4	D	222	223	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	328	first strand
Strand 2	D	290	299	anti-parallel
Strand 3	D	348	357	parallel
Strand 4	D	397	404	anti-parallel
Strand 5	D	371	374	anti-parallel
Strand 6	D	385	388	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	342	first strand
Strand 2	D	427	431	parallel
Strand 3	D	409	415	anti-parallel
Strand 4	D	362	367	anti-parallel
Strand 5	D	390	393	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	442	first strand
Strand 2	E	243	249	anti-parallel
Strand 3	E	204	211	anti-parallel
Strand 4	E	163	178	parallel
Strand 5	E	181	188	anti-parallel
Strand 6	E	309	310	parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	45	first strand
Strand 2	E	27	36	anti-parallel
Strand 3	E	64	70	parallel
Strand 4	E	97	103	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	60	first strand
Strand 2	E	125	131	parallel
Strand 3	E	108	113	anti-parallel
Strand 4	E	80	81	anti-parallel
Strand 5	E	86	87	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	200	first strand
Strand 2	E	274	280	parallel
Strand 3	E	254	259	anti-parallel
Strand 4	E	222	223	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	328	first strand
Strand 2	E	290	299	anti-parallel
Strand 3	E	348	357	parallel
Strand 4	E	398	404	anti-parallel
Strand 5	E	371	374	anti-parallel
Strand 6	E	385	388	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	341	343	first strand
Strand 2	E	427	431	parallel
Strand 3	E	409	415	anti-parallel
Strand 4	E	362	367	anti-parallel
Strand 5	E	390	393	anti-parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	440	442	first strand
Strand 2	F	243	249	anti-parallel
Strand 3	F	204	211	anti-parallel
Strand 4	F	163	178	parallel
Strand 5	F	181	188	anti-parallel
Strand 6	F	309	310	parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	45	first strand
Strand 2	F	27	36	anti-parallel
Strand 3	F	64	70	parallel
Strand 4	F	97	103	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	60	first strand
Strand 2	F	125	131	parallel
Strand 3	F	108	113	anti-parallel
Strand 4	F	80	81	anti-parallel
Strand 5	F	86	87	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	200	first strand
Strand 2	F	274	280	parallel
Strand 3	F	254	259	anti-parallel
Strand 4	F	222	223	anti-parallel

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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	328	first strand
Strand 2	F	290	299	anti-parallel
Strand 3	F	348	357	parallel
Strand 4	F	397	404	anti-parallel
Strand 5	F	371	374	anti-parallel
Strand 6	F	385	388	anti-parallel

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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	341	343	first strand
Strand 2	F	427	431	parallel
Strand 3	F	409	415	anti-parallel
Strand 4	F	362	367	anti-parallel
Strand 5	F	390	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2DV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
2DV6