Analysis of interatomic Contacts of Structural Units in PDB entry:
2DVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DVL entry

There are 2 chains in PDB entry 2DVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ARG 372
B
 LEU 3ARG 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 2DVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 21Right-handed alpha
Helix 2
2
A
21 32Right-handed alpha
Helix 3
3
A
36 46Right-handed alpha
Helix 4
4
A
47 51Right-handed 310
Helix 5
5
A
54 58Right-handed 310
Helix 6
6
A
63 78Right-handed alpha
Helix 7
7
A
78 89Right-handed alpha
Helix 8
8
A
90 100Right-handed alpha
Helix 9
9
A
101 108Right-handed alpha
Helix 10
10
A
108 114Right-handed alpha
Helix 11
11
A
131 135Right-handed 310
Helix 12
12
A
223 261Right-handed alpha
Helix 13
13
A
271 301Right-handed alpha
Helix 14
14
A
305 331Right-handed alpha
Helix 15
15
A
332 340Right-handed 310
Helix 16
16
A
341 351Right-handed alpha
Helix 17
17
A
352 354Right-handed 310
Helix 18
18
A
358 372Right-handed alpha
Helix 19
19
B
4 21Right-handed alpha
Helix 20
20
B
21 32Right-handed alpha
Helix 21
21
B
36 45Right-handed alpha
Helix 22
22
B
46 51Right-handed 310
Helix 23
23
B
54 58Right-handed 310
Helix 24
24
B
63 78Right-handed alpha
Helix 25
25
B
78 89Right-handed alpha
Helix 26
26
B
90 100Right-handed alpha
Helix 27
27
B
101 108Right-handed alpha
Helix 28
28
B
108 114Right-handed alpha
Helix 29
29
B
131 135Right-handed 310
Helix 30
30
B
223 261Right-handed alpha
Helix 31
31
B
271 301Right-handed alpha
Helix 32
32
B
305 331Right-handed alpha
Helix 33
33
B
332 340Right-handed 310
Helix 34
34
B
341 352Right-handed alpha
Helix 35
35
B
358 371Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2DVL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
163 170parallel
Strand 3
A
173 180anti-parallel
Strand 4
A
217 218anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
145 156anti-parallel
Strand 3
A
202 213anti-parallel
Strand 4
A
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
266 267anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
163 170parallel
Strand 3
B
173 180anti-parallel
Strand 4
B
217 218anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 142first strand
Strand 2
B
145 156anti-parallel
Strand 3
B
202 213anti-parallel
Strand 4
B
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
266 267anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il