Analysis of interatomic Contacts of Structural Units in PDB entry:
2DVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DVM entry

There are 4 chains in PDB entry 2DVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2ALA 439
B
 ILE 2ALA 435
C
 ILE 2ALA 439
D
 ILE 2THR 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 95 helices in PDB entry 2DVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 10Right-handed alpha
Helix 2
2
A
30 38Right-handed alpha
Helix 3
3
A
42 52Right-handed alpha
Helix 4
4
A
55 60Right-handed alpha
Helix 5
5
A
61 63Right-handed 310
Helix 6
6
A
82 102Right-handed alpha
Helix 7
7
A
114 125Right-handed alpha
Helix 8
8
A
126 129Right-handed 310
Helix 9
9
A
140 153Right-handed alpha
Helix 10
10
A
160 181Right-handed alpha
Helix 11
11
A
195 208Right-handed alpha
Helix 12
12
A
211 213Right-handed 310
Helix 13
13
A
233 238Right-handed alpha
Helix 14
14
A
241 246Right-handed alpha
Helix 15
15
A
256 262Right-handed alpha
Helix 16
16
A
279 284Right-handed alpha
Helix 17
17
A
303 311Right-handed alpha
Helix 18
18
A
327 330Right-handed 310
Helix 19
19
A
331 342Right-handed alpha
Helix 20
20
A
348 362Right-handed alpha
Helix 21
21
A
377 395Right-handed alpha
Helix 22
22
A
403 429Right-handed alpha
Helix 23
23
A
430 433Right-handed 310
Helix 24
24
B
2 10Right-handed alpha
Helix 25
25
B
30 38Right-handed alpha
Helix 26
26
B
42 52Right-handed alpha
Helix 27
27
B
55 60Right-handed alpha
Helix 28
28
B
61 63Right-handed 310
Helix 29
29
B
82 102Right-handed alpha
Helix 30
30
B
114 126Right-handed alpha
Helix 31
31
B
127 129Right-handed 310
Helix 32
32
B
140 153Right-handed alpha
Helix 33
33
B
160 181Right-handed alpha
Helix 34
34
B
195 208Right-handed alpha
Helix 35
35
B
211 213Right-handed 310
Helix 36
36
B
233 238Right-handed alpha
Helix 37
37
B
241 246Right-handed alpha
Helix 38
38
B
256 262Right-handed alpha
Helix 39
39
B
279 284Right-handed alpha
Helix 40
40
B
303 310Right-handed alpha
Helix 41
41
B
327 330Right-handed 310
Helix 42
42
B
331 342Right-handed alpha
Helix 43
43
B
348 362Right-handed alpha
Helix 44
44
B
377 395Right-handed alpha
Helix 45
45
B
403 421Right-handed alpha
Helix 46
46
B
421 430Right-handed alpha
Helix 47
47
B
431 433Right-handed 310
Helix 48
48
C
2 10Right-handed alpha
Helix 49
49
C
30 38Right-handed alpha
Helix 50
50
C
42 52Right-handed alpha
Helix 51
51
C
55 60Right-handed alpha
Helix 52
52
C
61 63Right-handed 310
Helix 53
53
C
81 102Right-handed alpha
Helix 54
54
C
114 125Right-handed alpha
Helix 55
55
C
126 129Right-handed 310
Helix 56
56
C
140 153Right-handed alpha
Helix 57
57
C
160 181Right-handed alpha
Helix 58
58
C
195 208Right-handed alpha
Helix 59
59
C
211 213Right-handed 310
Helix 60
60
C
233 238Right-handed alpha
Helix 61
61
C
241 246Right-handed alpha
Helix 62
62
C
256 262Right-handed alpha
Helix 63
63
C
279 285Right-handed alpha
Helix 64
64
C
303 310Right-handed alpha
Helix 65
65
C
327 330Right-handed 310
Helix 66
66
C
331 342Right-handed alpha
Helix 67
67
C
348 362Right-handed alpha
Helix 68
68
C
377 395Right-handed alpha
Helix 69
69
C
403 429Right-handed alpha
Helix 70
70
C
430 433Right-handed 310
Helix 71
71
D
2 10Right-handed alpha
Helix 72
72
D
30 38Right-handed alpha
Helix 73
73
D
42 52Right-handed alpha
Helix 74
74
D
55 60Right-handed alpha
Helix 75
75
D
61 63Right-handed 310
Helix 76
76
D
81 102Right-handed alpha
Helix 77
77
D
114 126Right-handed alpha
Helix 78
78
D
127 129Right-handed 310
Helix 79
79
D
140 153Right-handed alpha
Helix 80
80
D
160 181Right-handed alpha
Helix 81
81
D
183 187Right-handed 310
Helix 82
82
D
195 208Right-handed alpha
Helix 83
83
D
211 213Right-handed 310
Helix 84
84
D
233 238Right-handed alpha
Helix 85
85
D
241 246Right-handed alpha
Helix 86
86
D
256 262Right-handed alpha
Helix 87
87
D
279 285Right-handed alpha
Helix 88
88
D
303 310Right-handed alpha
Helix 89
89
D
327 330Right-handed 310
Helix 90
90
D
331 342Right-handed alpha
Helix 91
91
D
348 362Right-handed alpha
Helix 92
92
D
377 395Right-handed alpha
Helix 93
93
D
403 421Right-handed alpha
Helix 94
94
D
421 430Right-handed alpha
Helix 95
95
D
431 433Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 2DVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
B
20 24anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
65 70parallel
Strand 3
A
131 134parallel
Strand 4
A
157 159parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
189 192parallel
Strand 4
A
266 269parallel
Strand 5
A
291 294parallel
Strand 6
A
314 315parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 109first strand
Strand 2
B
65 70parallel
Strand 3
B
131 134parallel
Strand 4
B
157 159parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 227first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
189 192parallel
Strand 4
B
266 269parallel
Strand 5
B
291 294parallel
Strand 6
B
314 315parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 24first strand
Strand 2
D
20 24anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 109first strand
Strand 2
C
65 70parallel
Strand 3
C
131 134parallel
Strand 4
C
157 159parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 227first strand
Strand 2
C
215 221anti-parallel
Strand 3
C
189 192parallel
Strand 4
C
266 269parallel
Strand 5
C
291 294parallel
Strand 6
C
314 315parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 109first strand
Strand 2
D
65 70parallel
Strand 3
D
131 134parallel
Strand 4
D
157 159parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
224 227first strand
Strand 2
D
215 221anti-parallel
Strand 3
D
189 192parallel
Strand 4
D
266 269parallel
Strand 5
D
291 294parallel
Strand 6
D
314 315parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il