Analysis of interatomic Contacts of Structural Units in PDB entry:
2DVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DVR entry

There are 7 chains in PDB entry 2DVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7GLU 120
B
 GLY 7GLU 118
C
 THR 10GLN 116
P
 LYS 8GLY 11
P
 GLY 13ALA 15
Q
 GLY 6GLY 11
Q
 GLY 13ALA 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2DVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 19Right-handed alpha
Helix 2
2
A
19 26Right-handed alpha
Helix 3
3
A
30 34Right-handed 310
Helix 4
4
A
38 43Right-handed alpha
Helix 5
5
A
46 51Right-handed alpha
Helix 6
6
A
56 66Right-handed alpha
Helix 7
7
A
71 90Right-handed alpha
Helix 8
8
A
94 113Right-handed alpha
Helix 9
9
B
10 19Right-handed alpha
Helix 10
10
B
19 26Right-handed alpha
Helix 11
11
B
30 34Right-handed 310
Helix 12
12
B
38 43Right-handed alpha
Helix 13
13
B
46 51Right-handed alpha
Helix 14
14
B
56 66Right-handed alpha
Helix 15
15
B
71 90Right-handed alpha
Helix 16
16
B
94 112Right-handed alpha
Helix 17
17
C
10 19Right-handed alpha
Helix 18
18
C
19 27Right-handed alpha
Helix 19
19
C
46 51Right-handed alpha
Helix 20
20
C
56 66Right-handed alpha
Helix 21
21
C
71 90Right-handed alpha
Helix 22
22
C
94 112Right-handed alpha
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There are no sheets in PDB entry 2DVR
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il