Analysis of interatomic Contacts of Structural Units in PDB entry:
2DVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DVT entry

There are 4 chains in PDB entry 2DVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 325
B
 MET 1LEU 324
C
 MET 1GLY 326
D
 MET 1LEU 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 2DVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed alpha
Helix 2
2
A
19 21Right-handed 310
Helix 3
3
A
27 38Right-handed alpha
Helix 4
4
A
41 50Right-handed alpha
Helix 5
5
A
62 67Right-handed 310
Helix 6
6
A
69 91Right-handed alpha
Helix 7
7
A
105 119Right-handed alpha
Helix 8
8
A
144 146Right-handed 310
Helix 9
9
A
147 158Right-handed alpha
Helix 10
10
A
169 177Right-handed 310
Helix 11
11
A
179 186Right-handed 310
Helix 12
12
A
187 203Right-handed alpha
Helix 13
13
A
204 209Right-handed alpha
Helix 14
14
A
217 221Right-handed 310
Helix 15
15
A
222 233Right-handed alpha
Helix 16
16
A
248 256Right-handed alpha
Helix 17
17
A
266 275Right-handed alpha
Helix 18
18
A
278 280Right-handed 310
Helix 19
19
A
292 303Right-handed alpha
Helix 20
20
A
306 315Right-handed alpha
Helix 21
21
A
315 322Right-handed alpha
Helix 22
22
B
13 18Right-handed alpha
Helix 23
23
B
19 21Right-handed 310
Helix 24
24
B
28 38Right-handed alpha
Helix 25
25
B
41 50Right-handed alpha
Helix 26
26
B
62 67Right-handed 310
Helix 27
27
B
69 91Right-handed alpha
Helix 28
28
B
105 119Right-handed alpha
Helix 29
29
B
144 146Right-handed 310
Helix 30
30
B
147 158Right-handed alpha
Helix 31
31
B
169 177Right-handed 310
Helix 32
32
B
179 186Right-handed 310
Helix 33
33
B
187 203Right-handed alpha
Helix 34
34
B
204 209Right-handed alpha
Helix 35
35
B
217 221Right-handed 310
Helix 36
36
B
222 233Right-handed alpha
Helix 37
37
B
248 256Right-handed alpha
Helix 38
38
B
266 275Right-handed alpha
Helix 39
39
B
278 280Right-handed 310
Helix 40
40
B
292 303Right-handed alpha
Helix 41
41
B
306 315Right-handed alpha
Helix 42
42
B
315 322Right-handed alpha
Helix 43
43
C
13 18Right-handed alpha
Helix 44
44
C
26 38Right-handed alpha
Helix 45
45
C
41 50Right-handed alpha
Helix 46
46
C
62 67Right-handed 310
Helix 47
47
C
69 91Right-handed alpha
Helix 48
48
C
105 119Right-handed alpha
Helix 49
49
C
144 146Right-handed 310
Helix 50
50
C
147 158Right-handed alpha
Helix 51
51
C
169 177Right-handed 310
Helix 52
52
C
179 186Right-handed 310
Helix 53
53
C
187 203Right-handed alpha
Helix 54
54
C
204 209Right-handed alpha
Helix 55
55
C
217 221Right-handed 310
Helix 56
56
C
222 233Right-handed alpha
Helix 57
57
C
248 256Right-handed alpha
Helix 58
58
C
266 275Right-handed alpha
Helix 59
59
C
278 280Right-handed 310
Helix 60
60
C
292 303Right-handed alpha
Helix 61
61
C
306 315Right-handed alpha
Helix 62
62
C
315 322Right-handed alpha
Helix 63
63
D
13 18Right-handed alpha
Helix 64
64
D
26 38Right-handed alpha
Helix 65
65
D
41 50Right-handed alpha
Helix 66
66
D
62 67Right-handed 310
Helix 67
67
D
69 91Right-handed alpha
Helix 68
68
D
105 119Right-handed alpha
Helix 69
69
D
144 146Right-handed 310
Helix 70
70
D
147 158Right-handed alpha
Helix 71
71
D
169 177Right-handed 310
Helix 72
72
D
179 186Right-handed 310
Helix 73
73
D
187 203Right-handed alpha
Helix 74
74
D
204 209Right-handed alpha
Helix 75
75
D
217 221Right-handed 310
Helix 76
76
D
222 233Right-handed alpha
Helix 77
77
D
248 256Right-handed alpha
Helix 78
78
D
266 275Right-handed alpha
Helix 79
79
D
278 280Right-handed 310
Helix 80
80
D
292 303Right-handed alpha
Helix 81
81
D
306 315Right-handed alpha
Helix 82
82
D
315 322Right-handed alpha
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There are 4 sheets in PDB entry 2DVT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
52 59parallel
Strand 3
A
95 99parallel
Strand 4
A
124 128parallel
Strand 5
A
161 164parallel
Strand 6
A
214 216parallel
Strand 7
A
257 260parallel
Strand 8
A
282 283parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
52 59parallel
Strand 3
B
95 99parallel
Strand 4
B
124 128parallel
Strand 5
B
161 164parallel
Strand 6
B
214 216parallel
Strand 7
B
257 260parallel
Strand 8
B
282 283parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 11first strand
Strand 2
C
52 59parallel
Strand 3
C
95 99parallel
Strand 4
C
124 128parallel
Strand 5
C
161 164parallel
Strand 6
C
214 216parallel
Strand 7
C
257 260parallel
Strand 8
C
282 283parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 11first strand
Strand 2
D
52 59parallel
Strand 3
D
95 99parallel
Strand 4
D
124 128parallel
Strand 5
D
161 164parallel
Strand 6
D
214 216parallel
Strand 7
D
257 260parallel
Strand 8
D
282 283parallel
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