Analysis of interatomic Contacts of Structural Units in PDB entry:
2DVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DVY entry

There are 6 chains in PDB entry 2DVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 223
B
 VAL 7THR 225
C
 MET 1ILE 223
D
 GLU 8SER 221
E
 MET 1ILE 223
F
 GLU 8ILE 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2DVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 58Right-handed 310
Helix 2
2
A
76 88Right-handed alpha
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
109 114Right-handed alpha
Helix 5
5
A
171 173Right-handed 310
Helix 6
6
A
193 206Right-handed alpha
Helix 7
7
A
208 222Right-handed alpha
Helix 8
8
B
77 88Right-handed alpha
Helix 9
9
B
92 106Right-handed alpha
Helix 10
10
B
109 113Right-handed 310
Helix 11
11
B
171 173Right-handed 310
Helix 12
12
B
193 208Right-handed alpha
Helix 13
13
B
208 223Right-handed alpha
Helix 14
14
C
37 40Right-handed 310
Helix 15
15
C
56 58Right-handed 310
Helix 16
16
C
77 88Right-handed alpha
Helix 17
17
C
92 106Right-handed alpha
Helix 18
18
C
109 114Right-handed alpha
Helix 19
19
C
171 173Right-handed 310
Helix 20
20
C
193 206Right-handed alpha
Helix 21
21
C
208 223Right-handed alpha
Helix 22
22
D
77 87Right-handed alpha
Helix 23
23
D
92 97Right-handed alpha
Helix 24
24
D
98 105Right-handed alpha
Helix 25
25
D
109 114Right-handed alpha
Helix 26
26
D
194 206Right-handed alpha
Helix 27
27
D
208 220Right-handed alpha
Helix 28
28
E
77 87Right-handed alpha
Helix 29
29
E
92 106Right-handed alpha
Helix 30
30
E
109 114Right-handed alpha
Helix 31
31
E
171 173Right-handed 310
Helix 32
32
E
193 208Right-handed alpha
Helix 33
33
E
208 221Right-handed alpha
Helix 34
34
F
53 57Right-handed 310
Helix 35
35
F
76 88Right-handed alpha
Helix 36
36
F
94 104Right-handed alpha
Helix 37
37
F
109 114Right-handed alpha
Helix 38
38
F
169 171Right-handed 310
Helix 39
39
F
193 206Right-handed alpha
Helix 40
40
F
208 222Right-handed alpha
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There are 19 sheets in PDB entry 2DVY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
187 192anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
33 36anti-parallel
Strand 3
A
60 64anti-parallel
Strand 4
A
163 169anti-parallel
Strand 5
A
146 150anti-parallel
Strand 6
A
127 140anti-parallel
Strand 7
B
127 138anti-parallel
Strand 8
B
116 118anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 124first strand
Strand 2
A
127 140anti-parallel
Strand 3
B
127 138anti-parallel
Strand 4
B
123 124anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
188 192anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
31 36anti-parallel
Strand 3
B
60 64anti-parallel
Strand 4
B
166 169anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
161 164anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
187 192anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 43first strand
Strand 2
C
31 35anti-parallel
Strand 3
C
60 65anti-parallel
Strand 4
C
161 169anti-parallel
Strand 5
C
146 152anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 118first strand
Strand 2
C
127 136anti-parallel
Strand 3
C
123 124anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 118first strand
Strand 2
C
127 136anti-parallel
Strand 3
D
127 137anti-parallel
Strand 4
D
116 124anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
19 22anti-parallel
Strand 3
D
188 191anti-parallel
Strand 4
D
173 174anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 43first strand
Strand 2
D
31 35anti-parallel
Strand 3
D
60 64anti-parallel
Strand 4
D
167 169anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
149 153first strand
Strand 2
D
160 164anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 13first strand
Strand 2
E
18 22anti-parallel
Strand 3
E
188 192anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 43first strand
Strand 2
E
31 36anti-parallel
Strand 3
E
60 64anti-parallel
Strand 4
E
160 169anti-parallel
Strand 5
E
146 153anti-parallel
Strand 6
E
128 140anti-parallel
Strand 7
F
127 138anti-parallel
Strand 8
F
116 118anti-parallel
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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
123 124first strand
Strand 2
F
127 138anti-parallel
Strand 3
E
128 140anti-parallel
Strand 4
E
146 153anti-parallel
Strand 5
E
160 169anti-parallel
Strand 6
E
60 64anti-parallel
Strand 7
E
31 36anti-parallel
Strand 8
E
41 43anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 119first strand
Strand 2
E
128 140anti-parallel
Strand 3
F
127 138anti-parallel
Strand 4
F
146 152anti-parallel
Strand 5
F
161 167anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 12first strand
Strand 2
F
19 22anti-parallel
Strand 3
F
188 191anti-parallel
Strand 4
F
173 174anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
41 43first strand
Strand 2
F
31 36anti-parallel
Strand 3
F
60 64anti-parallel
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