Analysis of interatomic Contacts of Structural Units in PDB entry:
2DVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DVZ entry

There is 1 chain in PDB entry 2DVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15ASP 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2DVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 49Right-handed alpha
Helix 2
2
A
59 61Right-handed 310
Helix 3
3
A
62 72Right-handed alpha
Helix 4
4
A
83 88Right-handed alpha
Helix 5
5
A
88 94Right-handed alpha
Helix 6
6
A
129 139Right-handed alpha
Helix 7
7
A
153 167Right-handed alpha
Helix 8
8
A
177 188Right-handed alpha
Helix 9
9
A
197 206Right-handed alpha
Helix 10
10
A
220 224Right-handed 310
Helix 11
11
A
234 238Right-handed 310
Helix 12
12
A
252 268Right-handed alpha
Helix 13
13
A
269 280Right-handed alpha
Helix 14
14
A
287 308Right-handed alpha
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There are 2 sheets in PDB entry 2DVZ. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
21 25parallel
Strand 3
A
78 82parallel
Strand 4
A
241 248anti-parallel
Strand 5
A
106 115anti-parallel
Strand 6
A
281 283anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
145 148parallel
Strand 3
A
192 196parallel
Strand 4
A
117 121anti-parallel
Strand 5
A
210 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il