Analysis of interatomic Contacts of Structural Units in PDB entry:
2DW6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DW6 entry

There are 4 chains in PDB entry 2DW6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 389
B
 SER 2GLU 389
C
 SER 2GLU 389
D
 SER 2GLU 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 2DW6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 67Right-handed alpha
Helix 2
2
A
67 75Right-handed alpha
Helix 3
3
A
76 81Right-handed 310
Helix 4
4
A
89 98Right-handed alpha
Helix 5
5
A
108 129Right-handed alpha
Helix 6
6
A
131 141Right-handed alpha
Helix 7
7
A
162 176Right-handed alpha
Helix 8
8
A
189 205Right-handed alpha
Helix 9
9
A
219 231Right-handed alpha
Helix 10
10
A
246 254Right-handed alpha
Helix 11
11
A
269 280Right-handed alpha
Helix 12
12
A
292 296Right-handed 310
Helix 13
13
A
297 312Right-handed alpha
Helix 14
14
A
315 319Right-handed 310
Helix 15
15
A
325 336Right-handed alpha
Helix 16
16
A
373 376Right-handed 310
Helix 17
17
A
377 388Right-handed alpha
Helix 18
18
B
60 67Right-handed alpha
Helix 19
19
B
67 75Right-handed alpha
Helix 20
20
B
76 81Right-handed 310
Helix 21
21
B
89 98Right-handed alpha
Helix 22
22
B
108 129Right-handed alpha
Helix 23
23
B
131 141Right-handed alpha
Helix 24
24
B
162 176Right-handed alpha
Helix 25
25
B
189 205Right-handed alpha
Helix 26
26
B
219 231Right-handed alpha
Helix 27
27
B
246 254Right-handed alpha
Helix 28
28
B
269 280Right-handed alpha
Helix 29
29
B
292 296Right-handed 310
Helix 30
30
B
297 312Right-handed alpha
Helix 31
31
B
315 319Right-handed 310
Helix 32
32
B
325 336Right-handed alpha
Helix 33
33
B
373 376Right-handed 310
Helix 34
34
B
377 388Right-handed alpha
Helix 35
35
C
60 67Right-handed alpha
Helix 36
36
C
67 75Right-handed alpha
Helix 37
37
C
76 81Right-handed 310
Helix 38
38
C
89 98Right-handed alpha
Helix 39
39
C
108 129Right-handed alpha
Helix 40
40
C
131 141Right-handed alpha
Helix 41
41
C
162 176Right-handed alpha
Helix 42
42
C
189 205Right-handed alpha
Helix 43
43
C
219 231Right-handed alpha
Helix 44
44
C
246 254Right-handed alpha
Helix 45
45
C
269 280Right-handed alpha
Helix 46
46
C
292 296Right-handed 310
Helix 47
47
C
297 312Right-handed alpha
Helix 48
48
C
315 319Right-handed 310
Helix 49
49
C
325 336Right-handed alpha
Helix 50
50
C
373 376Right-handed 310
Helix 51
51
C
377 388Right-handed alpha
Helix 52
52
D
60 67Right-handed alpha
Helix 53
53
D
67 75Right-handed alpha
Helix 54
54
D
76 81Right-handed 310
Helix 55
55
D
89 98Right-handed alpha
Helix 56
56
D
108 129Right-handed alpha
Helix 57
57
D
131 140Right-handed alpha
Helix 58
58
D
162 175Right-handed alpha
Helix 59
59
D
189 205Right-handed alpha
Helix 60
60
D
219 231Right-handed alpha
Helix 61
61
D
246 254Right-handed alpha
Helix 62
62
D
269 280Right-handed alpha
Helix 63
63
D
297 312Right-handed alpha
Helix 64
64
D
315 319Right-handed 310
Helix 65
65
D
325 336Right-handed alpha
Helix 66
66
D
373 376Right-handed 310
Helix 67
67
D
377 388Right-handed alpha
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There are 13 sheets in PDB entry 2DW6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 14first strand
Strand 2
A
30 41anti-parallel
Strand 3
A
46 52anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
261 263parallel
Strand 3
A
237 239parallel
Strand 4
A
209 213parallel
Strand 5
A
180 184parallel
Strand 6
A
147 153parallel
Strand 7
A
340 342parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
261 263parallel
Strand 3
A
237 239parallel
Strand 4
A
209 213parallel
Strand 5
A
180 184parallel
Strand 6
A
147 153parallel
Strand 7
A
363 365anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 14first strand
Strand 2
B
30 42anti-parallel
Strand 3
B
45 52anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
261 263parallel
Strand 3
B
237 239parallel
Strand 4
B
209 213parallel
Strand 5
B
180 184parallel
Strand 6
B
147 153parallel
Strand 7
B
340 342parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
261 263parallel
Strand 3
B
237 239parallel
Strand 4
B
209 213parallel
Strand 5
B
180 184parallel
Strand 6
B
147 153parallel
Strand 7
B
363 365anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 14first strand
Strand 2
C
30 42anti-parallel
Strand 3
C
45 52anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 289first strand
Strand 2
C
261 263parallel
Strand 3
C
237 239parallel
Strand 4
C
209 213parallel
Strand 5
C
180 184parallel
Strand 6
C
147 153parallel
Strand 7
C
340 342parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 289first strand
Strand 2
C
261 263parallel
Strand 3
C
237 239parallel
Strand 4
C
209 213parallel
Strand 5
C
180 184parallel
Strand 6
C
147 153parallel
Strand 7
C
363 365anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 14first strand
Strand 2
D
30 42anti-parallel
Strand 3
D
45 52anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
24 25anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
288 289first strand
Strand 2
D
261 263parallel
Strand 3
D
235 239parallel
Strand 4
D
209 213parallel
Strand 5
D
180 184parallel
Strand 6
D
147 153parallel
Strand 7
D
340 342parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
288 289first strand
Strand 2
D
261 263parallel
Strand 3
D
235 239parallel
Strand 4
D
209 213parallel
Strand 5
D
180 184parallel
Strand 6
D
147 153parallel
Strand 7
D
363 365anti-parallel
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