Analysis of interatomic Contacts of Structural Units in PDB entry:
2DXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DXE entry

There are 2 chains in PDB entry 2DXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6GLY 159
B
 SER 5ILE 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2DXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 21Right-handed alpha
Helix 2
2
A
23 35Right-handed alpha
Helix 3
3
A
47 55Right-handed alpha
Helix 4
4
A
56 59Right-handed 310
Helix 5
5
A
63 72Right-handed alpha
Helix 6
6
A
85 95Right-handed alpha
Helix 7
7
A
98 102Right-handed 310
Helix 8
8
A
106 112Right-handed alpha
Helix 9
9
A
128 140Right-handed alpha
Helix 10
10
A
141 145Right-handed 310
Helix 11
11
A
152 157Right-handed alpha
Helix 12
12
B
15 21Right-handed alpha
Helix 13
13
B
23 35Right-handed alpha
Helix 14
14
B
47 55Right-handed alpha
Helix 15
15
B
56 59Right-handed 310
Helix 16
16
B
63 72Right-handed alpha
Helix 17
17
B
85 95Right-handed alpha
Helix 18
18
B
106 112Right-handed alpha
Helix 19
19
B
128 140Right-handed alpha
Helix 20
20
B
141 145Right-handed 310
Helix 21
21
B
152 157Right-handed 310
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There are 2 sheets in PDB entry 2DXE. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 44first strand
Strand 2
A
76 84anti-parallel
Strand 3
A
7 14anti-parallel
Strand 4
A
123 125anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 44first strand
Strand 2
B
76 84anti-parallel
Strand 3
B
7 14anti-parallel
Strand 4
B
123 125anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il