Analysis of interatomic Contacts of Structural Units in PDB entry:
2DXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DXO entry

There is 1 chain in PDB entry 2DXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue

 MET 1LYS 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2DXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
9 23Right-handed alpha
Helix 2
2
38 41Right-handed 310
Helix 3
3
42 47Right-handed alpha
Helix 4
4
61 76Right-handed alpha
Helix 5
5
83 86Right-handed 310
Helix 6
6
117 122Right-handed alpha
Helix 7
7
139 154Right-handed alpha
Helix 8
8
165 171Right-handed alpha
Helix 9
9
180 182Right-handed 310
Helix 10
10
183 188Right-handed alpha
Helix 11
11
216 220Right-handed 310
Helix 12
12
250 265Right-handed alpha
Helix 13
13
266 271Right-handed 310
Helix 14
14
312 335Right-handed alpha
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There are 3 sheets in PDB entry 2DXO. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

157 160first strand
Strand 2

30 35parallel
Strand 3

2 6parallel
Strand 4

175 178parallel
Strand 5

301 307parallel
Strand 6

288 294anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

111 115first strand
Strand 2

129 138anti-parallel
Strand 3

88 97anti-parallel
Strand 4

211 215parallel
Strand 5

226 229anti-parallel
Strand 6

234 237anti-parallel
Strand 7

194 204anti-parallel
Strand 8

241 242anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

111 115first strand
Strand 2

129 138anti-parallel
Strand 3

88 97anti-parallel
Strand 4

211 215parallel
Strand 5

226 229anti-parallel
Strand 6

234 237anti-parallel
Strand 7

194 204anti-parallel
Strand 8

272 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il