Analysis of interatomic Contacts of Structural Units in PDB entry:
2DXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DXP entry

There are 3 chains in PDB entry 2DXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 158
B
 ALA 170ALA 170
B
 ARG 172ARG 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 2DXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 28Right-handed alpha
Helix 2
2
A
37 46Right-handed alpha
Helix 3
3
A
47 58Right-handed alpha
Helix 4
4
A
74 88Right-handed alpha
Helix 5
5
A
100 115Right-handed alpha
Helix 6
6
A
118 128Right-handed alpha
Helix 7
7
A
136 149Right-handed alpha
Helix 8
8
A
149 158Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2DXP.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
9 12anti-parallel
Strand 3
A
92 95parallel
Strand 4
A
31 34parallel
Strand 5
A
61 64parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il