Analysis of interatomic Contacts of Structural Units in PDB entry:
2DXQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DXQ entry

There are 2 chains in PDB entry 2DXQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4ASP 150
B
 ILE 6GLN 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2DXQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 27Right-handed alpha
Helix 3
3
A
34 48Right-handed alpha
Helix 4
4
A
74 79Right-handed alpha
Helix 5
5
A
90 94Right-handed 310
Helix 6
6
A
97 113Right-handed alpha
Helix 7
7
A
126 136Right-handed alpha
Helix 8
8
B
12 14Right-handed 310
Helix 9
9
B
15 27Right-handed alpha
Helix 10
10
B
38 48Right-handed alpha
Helix 11
11
B
74 79Right-handed alpha
Helix 12
12
B
91 94Right-handed 310
Helix 13
13
B
97 113Right-handed alpha
Helix 14
14
B
126 136Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2DXQ.

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
61 71anti-parallel
Strand 4
A
81 88anti-parallel
Strand 5
A
117 122parallel
Strand 6
B
139 148anti-parallel
Strand 7
A
139 148anti-parallel
Strand 8
B
117 123anti-parallel
Strand 9
B
81 89parallel
Strand 10
B
61 71anti-parallel
Strand 11
B
51 58anti-parallel
Strand 12
B
7 10anti-parallel
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