Analysis of interatomic Contacts of Structural Units in PDB entry:
2DYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DYL entry

There is 1 chain in PDB entry 2DYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 119GLU 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2DYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
132 134Right-handed 310
Helix 2
2
A
172 189Right-handed alpha
Helix 3
3
A
219 227Right-handed alpha
Helix 4
4
A
231 254Right-handed alpha
Helix 5
5
A
261 263Right-handed 310
Helix 6
6
A
301 306Right-handed alpha
Helix 7
7
A
317 334Right-handed alpha
Helix 8
8
A
343 354Right-handed alpha
Helix 9
9
A
366 377Right-handed alpha
Helix 10
10
A
386 391Right-handed alpha
Helix 11
11
A
393 402Right-handed alpha
Helix 12
12
A
405 416Right-handed alpha
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There are 2 sheets in PDB entry 2DYL. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
122 124anti-parallel
Strand 3
A
198 203anti-parallel
Strand 4
A
207 212anti-parallel
Strand 5
A
161 168anti-parallel
Strand 6
A
150 155anti-parallel
Strand 7
A
136 141anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
265 267anti-parallel
Strand 3
A
273 275anti-parallel
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