Analysis of interatomic Contacts of Structural Units in PDB entry:
2DYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DYM entry

There are 8 chains in PDB entry 2DYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1PRO 283
B
 SER 23PHE 46
C
 ALA -1ILE 284
D
 SER 23PHE 46
E
 ALA -1ILE 284
F
 SER 23PHE 46
G
 ALA -1ILE 284
H
 SER 23PHE 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 2DYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 10Right-handed alpha
Helix 2
2
A
44 47Right-handed 310
Helix 3
3
A
48 56Right-handed alpha
Helix 4
4
A
86 95Right-handed alpha
Helix 5
5
A
138 157Right-handed alpha
Helix 6
6
A
159 164Right-handed alpha
Helix 7
7
A
166 180Right-handed alpha
Helix 8
8
A
181 193Right-handed alpha
Helix 9
9
A
228 231Right-handed 310
Helix 10
10
A
232 238Right-handed alpha
Helix 11
11
A
262 271Right-handed alpha
Helix 12
12
B
23 41Right-handed alpha
Helix 13
13
B
42 46Right-handed 310
Helix 14
14
C
-1 10Right-handed alpha
Helix 15
15
C
21 24Right-handed 310
Helix 16
16
C
44 47Right-handed 310
Helix 17
17
C
48 56Right-handed alpha
Helix 18
18
C
86 95Right-handed alpha
Helix 19
19
C
138 157Right-handed alpha
Helix 20
20
C
159 164Right-handed alpha
Helix 21
21
C
166 180Right-handed alpha
Helix 22
22
C
181 193Right-handed alpha
Helix 23
23
C
229 233Right-handed 310
Helix 24
24
C
262 271Right-handed alpha
Helix 25
25
D
23 41Right-handed alpha
Helix 26
26
D
42 46Right-handed 310
Helix 27
27
E
-1 10Right-handed alpha
Helix 28
28
E
21 24Right-handed 310
Helix 29
29
E
44 47Right-handed 310
Helix 30
30
E
48 54Right-handed alpha
Helix 31
31
E
86 95Right-handed alpha
Helix 32
32
E
138 157Right-handed alpha
Helix 33
33
E
159 165Right-handed alpha
Helix 34
34
E
166 180Right-handed alpha
Helix 35
35
E
181 192Right-handed alpha
Helix 36
36
E
229 231Right-handed 310
Helix 37
37
E
232 237Right-handed alpha
Helix 38
38
E
262 271Right-handed alpha
Helix 39
39
F
23 41Right-handed alpha
Helix 40
40
F
42 46Right-handed 310
Helix 41
41
G
-1 10Right-handed alpha
Helix 42
42
G
44 47Right-handed 310
Helix 43
43
G
48 55Right-handed alpha
Helix 44
44
G
86 95Right-handed alpha
Helix 45
45
G
138 157Right-handed alpha
Helix 46
46
G
159 164Right-handed alpha
Helix 47
47
G
166 180Right-handed alpha
Helix 48
48
G
181 193Right-handed alpha
Helix 49
49
G
229 231Right-handed 310
Helix 50
50
G
232 238Right-handed alpha
Helix 51
51
G
262 271Right-handed alpha
Helix 52
52
H
23 41Right-handed alpha
Helix 53
53
H
42 46Right-handed 310
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There are 8 sheets in PDB entry 2DYM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
115 122parallel
Strand 4
A
72 76anti-parallel
Strand 5
A
79 81anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
202 205anti-parallel
Strand 3
A
277 282parallel
Strand 4
A
249 252anti-parallel
Strand 5
A
255 256anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 40first strand
Strand 2
C
12 19anti-parallel
Strand 3
C
115 123parallel
Strand 4
C
71 76anti-parallel
Strand 5
C
79 81anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 216first strand
Strand 2
C
202 205anti-parallel
Strand 3
C
277 283parallel
Strand 4
C
248 252anti-parallel
Strand 5
C
255 256anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 40first strand
Strand 2
E
12 19anti-parallel
Strand 3
E
116 123parallel
Strand 4
E
71 76anti-parallel
Strand 5
E
79 81anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
215 216first strand
Strand 2
E
202 206anti-parallel
Strand 3
E
277 283parallel
Strand 4
E
248 252anti-parallel
Strand 5
E
255 256anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
34 40first strand
Strand 2
G
12 19anti-parallel
Strand 3
G
115 123parallel
Strand 4
G
71 76anti-parallel
Strand 5
G
79 80anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
215 216first strand
Strand 2
G
202 206anti-parallel
Strand 3
G
277 283parallel
Strand 4
G
248 252anti-parallel
Strand 5
G
255 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il