Analysis of interatomic Contacts of Structural Units in PDB entry:
2DYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DYO entry

There are 2 chains in PDB entry 2DYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 285
B
 ASP 22ILE 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2DYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 10Right-handed alpha
Helix 2
2
A
21 24Right-handed 310
Helix 3
3
A
29 32Right-handed 310
Helix 4
4
A
44 47Right-handed 310
Helix 5
5
A
48 57Right-handed alpha
Helix 6
6
A
58 60Right-handed 310
Helix 7
7
A
86 96Right-handed alpha
Helix 8
8
A
97 99Right-handed 310
Helix 9
9
A
138 157Right-handed alpha
Helix 10
10
A
159 164Right-handed alpha
Helix 11
11
A
166 180Right-handed alpha
Helix 12
12
A
181 193Right-handed alpha
Helix 13
13
A
229 231Right-handed 310
Helix 14
14
A
232 237Right-handed alpha
Helix 15
15
A
262 271Right-handed alpha
Helix 16
16
B
22 41Right-handed alpha
Helix 17
17
B
42 46Right-handed 310
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There are 2 sheets in PDB entry 2DYO. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
115 123parallel
Strand 4
A
71 76anti-parallel
Strand 5
A
79 81anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
202 205anti-parallel
Strand 3
A
277 283parallel
Strand 4
A
248 252anti-parallel
Strand 5
A
255 257anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il