Analysis of interatomic Contacts of Structural Units in PDB entry:
2DYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DYV entry

There are 2 chains in PDB entry 2DYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 13LYS 334
B
 GLY 13LYS 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2DYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 50Right-handed alpha
Helix 2
2
A
73 77Right-handed 310
Helix 3
3
A
82 96Right-handed alpha
Helix 4
4
A
156 158Right-handed 310
Helix 5
5
A
167 170Right-handed 310
Helix 6
6
A
171 181Right-handed alpha
Helix 7
7
A
196 212Right-handed alpha
Helix 8
8
A
259 270Right-handed alpha
Helix 9
9
A
274 279Right-handed alpha
Helix 10
10
A
296 304Right-handed alpha
Helix 11
11
A
311 315Right-handed 310
Helix 12
12
A
320 324Right-handed 310
Helix 13
13
B
28 50Right-handed alpha
Helix 14
14
B
73 77Right-handed 310
Helix 15
15
B
82 96Right-handed alpha
Helix 16
16
B
156 158Right-handed 310
Helix 17
17
B
167 170Right-handed 310
Helix 18
18
B
171 181Right-handed alpha
Helix 19
19
B
196 212Right-handed alpha
Helix 20
20
B
259 270Right-handed alpha
Helix 21
21
B
274 279Right-handed alpha
Helix 22
22
B
296 304Right-handed alpha
Helix 23
23
B
311 315Right-handed 310
Helix 24
24
B
319 323Right-handed 310
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There are 4 sheets in PDB entry 2DYV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 132first strand
Strand 2
A
115 121anti-parallel
Strand 3
A
98 105anti-parallel
Strand 4
A
53 57parallel
Strand 5
A
14 19parallel
Strand 6
A
253 258anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
185 190parallel
Strand 4
A
214 219parallel
Strand 5
A
232 236anti-parallel
Strand 6
A
242 245anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 132first strand
Strand 2
B
115 121anti-parallel
Strand 3
B
98 105anti-parallel
Strand 4
B
53 57parallel
Strand 5
B
14 19parallel
Strand 6
B
253 258anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
160 165anti-parallel
Strand 3
B
185 190parallel
Strand 4
B
214 219parallel
Strand 5
B
232 236anti-parallel
Strand 6
B
242 245anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il