Analysis of interatomic Contacts of Structural Units in PDB entry:
2DZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DZB entry

There are 2 chains in PDB entry 2DZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14GLY 287
B
 ARG 15TYR 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2DZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 65Right-handed alpha
Helix 2
2
A
86 101Right-handed alpha
Helix 3
3
A
112 123Right-handed alpha
Helix 4
4
A
135 146Right-handed alpha
Helix 5
5
A
161 166Right-handed 310
Helix 6
6
A
170 189Right-handed alpha
Helix 7
7
A
205 215Right-handed alpha
Helix 8
8
A
215 221Right-handed alpha
Helix 9
9
A
233 241Right-handed alpha
Helix 10
10
A
244 247Right-handed 310
Helix 11
11
A
248 262Right-handed alpha
Helix 12
12
A
271 286Right-handed alpha
Helix 13
13
B
52 64Right-handed alpha
Helix 14
14
B
92 101Right-handed alpha
Helix 15
15
B
112 123Right-handed alpha
Helix 16
16
B
135 145Right-handed alpha
Helix 17
17
B
170 189Right-handed alpha
Helix 18
18
B
205 215Right-handed alpha
Helix 19
19
B
215 221Right-handed alpha
Helix 20
20
B
233 241Right-handed alpha
Helix 21
21
B
244 247Right-handed 310
Helix 22
22
B
248 262Right-handed alpha
Helix 23
23
B
271 286Right-handed alpha
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There are 4 sheets in PDB entry 2DZB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
23 25anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 197first strand
Strand 2
A
148 152parallel
Strand 3
A
126 129parallel
Strand 4
A
106 109parallel
Strand 5
A
68 72parallel
Strand 6
A
30 36parallel
Strand 7
A
266 269parallel
Strand 8
A
227 228parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
23 25anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
148 152parallel
Strand 3
B
126 129parallel
Strand 4
B
106 109parallel
Strand 5
B
68 72parallel
Strand 6
B
30 36parallel
Strand 7
B
266 269parallel
Strand 8
B
227 228parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il