Analysis of interatomic Contacts of Structural Units in PDB entry:
2DZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DZD entry

There are 2 chains in PDB entry 2DZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3PHE 461
B
 THR 3PHE 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2DZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 29Right-handed alpha
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
44 49Right-handed alpha
Helix 4
4
A
62 66Right-handed 310
Helix 5
5
A
67 78Right-handed alpha
Helix 6
6
A
93 103Right-handed alpha
Helix 7
7
A
111 118Right-handed alpha
Helix 8
8
A
120 131Right-handed alpha
Helix 9
9
A
145 157Right-handed alpha
Helix 10
10
A
178 180Right-handed 310
Helix 11
11
A
181 197Right-handed alpha
Helix 12
12
A
253 271Right-handed alpha
Helix 13
13
A
298 300Right-handed 310
Helix 14
14
A
301 309Right-handed alpha
Helix 15
15
A
311 321Right-handed alpha
Helix 16
16
A
334 338Right-handed 310
Helix 17
17
A
353 357Right-handed 310
Helix 18
18
A
406 420Right-handed alpha
Helix 19
19
A
429 439Right-handed alpha
Helix 20
20
A
439 444Right-handed alpha
Helix 21
21
A
450 455Right-handed alpha
Helix 22
22
A
456 460Right-handed 310
Helix 23
23
B
14 28Right-handed alpha
Helix 24
24
B
37 49Right-handed 310
Helix 25
25
B
60 65Right-handed alpha
Helix 26
26
B
67 78Right-handed alpha
Helix 27
27
B
93 103Right-handed alpha
Helix 28
28
B
111 119Right-handed alpha
Helix 29
29
B
120 130Right-handed alpha
Helix 30
30
B
145 157Right-handed alpha
Helix 31
31
B
178 194Right-handed alpha
Helix 32
32
B
253 272Right-handed alpha
Helix 33
33
B
300 309Right-handed alpha
Helix 34
34
B
311 321Right-handed alpha
Helix 35
35
B
406 421Right-handed alpha
Helix 36
36
B
429 439Right-handed alpha
Helix 37
37
B
439 444Right-handed alpha
Helix 38
38
B
451 460Right-handed 310
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There are 10 sheets in PDB entry 2DZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
31 36parallel
Strand 3
A
8 11parallel
Strand 4
A
82 84parallel
Strand 5
A
106 107parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
160 164anti-parallel
Strand 3
A
202 206anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 294first strand
Strand 2
A
275 284anti-parallel
Strand 3
A
212 220anti-parallel
Strand 4
A
226 238anti-parallel
Strand 5
A
241 247anti-parallel
Strand 6
A
343 350anti-parallel
Strand 7
A
396 404anti-parallel
Strand 8
A
376 380anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
388 389anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
422 424anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
31 36parallel
Strand 3
B
8 11parallel
Strand 4
B
82 84parallel
Strand 5
B
106 107parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 176first strand
Strand 2
B
160 164anti-parallel
Strand 3
B
202 206anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 294first strand
Strand 2
B
275 284anti-parallel
Strand 3
B
212 220anti-parallel
Strand 4
B
226 238anti-parallel
Strand 5
B
241 247anti-parallel
Strand 6
B
343 350anti-parallel
Strand 7
B
396 404anti-parallel
Strand 8
B
376 380anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 364first strand
Strand 2
B
388 389anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 369first strand
Strand 2
B
422 424anti-parallel
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