Analysis of interatomic Contacts of Structural Units in PDB entry:
2DZG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DZG entry

There is 1 chain in PDB entry 2DZG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue

 MET 1HIS 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2DZG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
13 27Right-handed alpha
Helix 2
2
47 51Right-handed 310
Helix 3
3
64 82Right-handed alpha
Helix 4
4
83 85Right-handed 310
Helix 5
5
99 107Right-handed 310
Helix 6
6
119 123Right-handed 310
Helix 7
7
138 153Right-handed alpha
Helix 8
8
164 168Right-handed 310
Helix 9
9
179 185Right-handed 310
Helix 10
10
248 263Right-handed alpha
Helix 11
11
264 267Right-handed 310
Helix 12
12
271 275Right-handed 310
Helix 13
13
336 359Right-handed alpha
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There are 3 sheets in PDB entry 2DZG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

156 159first strand
Strand 2

29 34parallel
Strand 3

6 10parallel
Strand 4

174 177parallel
Strand 5

323 331parallel
Strand 6

293 301anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

116 117first strand
Strand 2

128 136anti-parallel
Strand 3

88 97anti-parallel
Strand 4

212 214parallel
Strand 5

222 227anti-parallel
Strand 6

231 235anti-parallel
Strand 7

194 205anti-parallel
Strand 8

239 240anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

116 117first strand
Strand 2

128 136anti-parallel
Strand 3

88 97anti-parallel
Strand 4

212 214parallel
Strand 5

222 227anti-parallel
Strand 6

231 235anti-parallel
Strand 7

194 205anti-parallel
Strand 8

276 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il