Analysis of interatomic Contacts of Structural Units in PDB entry:
2E1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E1D entry

There are 2 chains in PDB entry 2E1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12SER 332
B
 MET 11PHE 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2E1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 19Right-handed alpha
Helix 2
2
A
30 34Right-handed 310
Helix 3
3
A
45 54Right-handed alpha
Helix 4
4
A
55 57Right-handed 310
Helix 5
5
A
58 73Right-handed alpha
Helix 6
6
A
75 99Right-handed alpha
Helix 7
7
A
108 112Right-handed 310
Helix 8
8
A
114 132Right-handed alpha
Helix 9
9
A
135 137Right-handed 310
Helix 10
10
A
146 161Right-handed alpha
Helix 11
11
A
171 182Right-handed alpha
Helix 12
12
A
190 201Right-handed alpha
Helix 13
13
A
207 210Right-handed 310
Helix 14
14
A
211 227Right-handed alpha
Helix 15
15
A
240 246Right-handed alpha
Helix 16
16
A
256 266Right-handed alpha
Helix 17
17
A
275 280Right-handed alpha
Helix 18
18
A
290 300Right-handed alpha
Helix 19
19
A
301 331Right-handed alpha
Helix 20
20
B
13 22Right-handed alpha
Helix 21
21
B
30 38Right-handed 310
Helix 22
22
B
45 53Right-handed alpha
Helix 23
23
B
54 57Right-handed 310
Helix 24
24
B
58 73Right-handed alpha
Helix 25
25
B
75 97Right-handed alpha
Helix 26
26
B
108 112Right-handed 310
Helix 27
27
B
114 132Right-handed alpha
Helix 28
28
B
135 137Right-handed 310
Helix 29
29
B
146 161Right-handed alpha
Helix 30
30
B
171 182Right-handed alpha
Helix 31
31
B
190 201Right-handed alpha
Helix 32
32
B
207 210Right-handed 310
Helix 33
33
B
211 227Right-handed alpha
Helix 34
34
B
240 246Right-handed alpha
Helix 35
35
B
256 266Right-handed alpha
Helix 36
36
B
275 281Right-handed alpha
Helix 37
37
B
290 300Right-handed alpha
Helix 38
38
B
301 331Right-handed alpha
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There are 2 sheets in PDB entry 2E1D. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
41 43parallel
Strand 3
A
103 106parallel
Strand 4
A
139 144parallel
Strand 5
A
164 169parallel
Strand 6
A
185 188parallel
Strand 7
A
232 235parallel
Strand 8
A
252 255parallel
Strand 9
A
23 27parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
41 43parallel
Strand 3
B
103 106parallel
Strand 4
B
139 144parallel
Strand 5
B
164 169parallel
Strand 6
B
185 188parallel
Strand 7
B
232 235parallel
Strand 8
B
252 255parallel
Strand 9
B
23 27parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il