Analysis of interatomic Contacts of Structural Units in PDB entry:
2E28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E28 entry

There is 1 chain in PDB entry 2E28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2E28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 28Right-handed alpha
Helix 2
2
A
40 58Right-handed alpha
Helix 3
3
A
172 186Right-handed alpha
Helix 4
4
A
197 211Right-handed alpha
Helix 5
5
A
224 230Right-handed alpha
Helix 6
6
A
230 238Right-handed alpha
Helix 7
7
A
245 252Right-handed alpha
Helix 8
8
A
253 255Right-handed 310
Helix 9
9
A
256 272Right-handed alpha
Helix 10
10
A
282 287Right-handed 310
Helix 11
11
A
292 306Right-handed alpha
Helix 12
12
A
313 318Right-handed alpha
Helix 13
13
A
321 338Right-handed alpha
Helix 14
14
A
341 351Right-handed alpha
Helix 15
15
A
356 372Right-handed alpha
Helix 16
16
A
384 393Right-handed alpha
Helix 17
17
A
405 412Right-handed alpha
Helix 18
18
A
413 415Right-handed 310
Helix 19
19
A
428 444Right-handed alpha
Helix 20
20
A
498 506Right-handed alpha
Helix 21
21
A
518 520Right-handed 310
Helix 22
22
A
521 526Right-handed alpha
Helix 23
23
A
540 550Right-handed alpha
Helix 24
24
A
559 564Right-handed alpha
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There are 5 sheets in PDB entry 2E28. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
29 35parallel
Strand 3
A
63 67parallel
Strand 4
A
189 192parallel
Strand 5
A
217 222parallel
Strand 6
A
240 244parallel
Strand 7
A
275 278parallel
Strand 8
A
309 312parallel
Strand 9
A
6 10parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
90 94parallel
Strand 3
A
142 146anti-parallel
Strand 4
A
129 137anti-parallel
Strand 5
A
121 124anti-parallel
Strand 6
A
159 160anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 422first strand
Strand 2
A
399 403parallel
Strand 3
A
376 380parallel
Strand 4
A
451 456parallel
Strand 5
A
468 473anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 480first strand
Strand 2
A
578 581anti-parallel
Strand 3
A
570 573anti-parallel
Strand 4
A
488 489anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
553 555anti-parallel
Strand 3
A
530 533parallel
Strand 4
A
511 514parallel
Strand 5
A
493 495parallel
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