Analysis of interatomic Contacts of Structural Units in PDB entry:
2E39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E39 entry

There is 1 chain in PDB entry 2E39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9PRO 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2E39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 22Right-handed 310
Helix 2
2
A
23 36Right-handed alpha
Helix 3
3
A
44 59Right-handed alpha
Helix 4
4
A
62 68Right-handed alpha
Helix 5
5
A
78 83Right-handed alpha
Helix 6
6
A
83 88Right-handed alpha
Helix 7
7
A
89 94Right-handed 310
Helix 8
8
A
96 111Right-handed alpha
Helix 9
9
A
113 128Right-handed alpha
Helix 10
10
A
159 171Right-handed alpha
Helix 11
11
A
173 181Right-handed alpha
Helix 12
12
A
182 186Right-handed 310
Helix 13
13
A
210 217Right-handed alpha
Helix 14
14
A
244 252Right-handed alpha
Helix 15
15
A
255 262Right-handed alpha
Helix 16
16
A
265 281Right-handed alpha
Helix 17
17
A
286 290Right-handed 310
Helix 18
18
A
294 297Right-handed 310
Helix 19
19
A
314 318Right-handed 310
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There are 4 sheets in PDB entry 2E39. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
17 18anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
291 292anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
199 200anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
242 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il