Analysis of interatomic Contacts of Structural Units in PDB entry:
2E5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E5V entry

There are 2 chains in PDB entry 2E5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 472
B
 MET 1VAL 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2E5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 21Right-handed alpha
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
53 66Right-handed alpha
Helix 4
4
A
70 91Right-handed alpha
Helix 5
5
A
116 132Right-handed alpha
Helix 6
6
A
175 179Right-handed 310
Helix 7
7
A
190 199Right-handed alpha
Helix 8
8
A
217 221Right-handed 310
Helix 9
9
A
227 232Right-handed alpha
Helix 10
10
A
243 248Right-handed 310
Helix 11
11
A
251 255Right-handed 310
Helix 12
12
A
256 270Right-handed alpha
Helix 13
13
A
283 288Right-handed alpha
Helix 14
14
A
288 298Right-handed alpha
Helix 15
15
A
351 364Right-handed alpha
Helix 16
16
A
365 367Right-handed 310
Helix 17
17
A
394 406Right-handed alpha
Helix 18
18
A
411 423Right-handed alpha
Helix 19
19
A
427 443Right-handed alpha
Helix 20
20
A
459 463Right-handed 310
Helix 21
21
B
8 21Right-handed alpha
Helix 22
22
B
36 40Right-handed 310
Helix 23
23
B
53 65Right-handed alpha
Helix 24
24
B
70 92Right-handed alpha
Helix 25
25
B
116 132Right-handed alpha
Helix 26
26
B
175 179Right-handed 310
Helix 27
27
B
190 199Right-handed alpha
Helix 28
28
B
217 221Right-handed 310
Helix 29
29
B
227 232Right-handed alpha
Helix 30
30
B
243 248Right-handed 310
Helix 31
31
B
251 255Right-handed 310
Helix 32
32
B
256 270Right-handed alpha
Helix 33
33
B
283 288Right-handed alpha
Helix 34
34
B
288 298Right-handed alpha
Helix 35
35
B
351 363Right-handed alpha
Helix 36
36
B
364 367Right-handed 310
Helix 37
37
B
394 406Right-handed alpha
Helix 38
38
B
411 423Right-handed alpha
Helix 39
39
B
427 443Right-handed alpha
Helix 40
40
B
459 463Right-handed 310
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There are 12 sheets in PDB entry 2E5V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
25 28parallel
Strand 3
A
2 5parallel
Strand 4
A
167 170parallel
Strand 5
A
332 334parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
110 111anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 147first strand
Strand 2
A
150 156anti-parallel
Strand 3
A
160 162anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
318 320parallel
Strand 3
A
203 204anti-parallel
Strand 4
A
465 470anti-parallel
Strand 5
A
380 385parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
309 315anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
274 277anti-parallel
Strand 3
A
306 307anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 138first strand
Strand 2
B
25 29parallel
Strand 3
B
2 5parallel
Strand 4
B
167 170parallel
Strand 5
B
332 334parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
110 111anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 147first strand
Strand 2
B
150 156anti-parallel
Strand 3
B
160 162anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
318 320parallel
Strand 3
B
203 204anti-parallel
Strand 4
B
465 470anti-parallel
Strand 5
B
380 385parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
209 216anti-parallel
Strand 3
B
309 315anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 238first strand
Strand 2
B
274 277anti-parallel
Strand 3
B
306 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il