Analysis of interatomic Contacts of Structural Units in PDB entry:
2E6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E6E entry

There are 4 chains in PDB entry 2E6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 236
B
 MET 1GLN 238
C
 MET 1GLN 238
D
 MET 1LEU 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 2E6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
73 85Right-handed alpha
Helix 3
3
A
101 107Right-handed 310
Helix 4
4
A
108 120Right-handed alpha
Helix 5
5
A
137 153Right-handed alpha
Helix 6
6
A
212 219Right-handed alpha
Helix 7
7
B
13 25Right-handed alpha
Helix 8
8
B
73 85Right-handed alpha
Helix 9
9
B
112 120Right-handed alpha
Helix 10
10
B
137 153Right-handed alpha
Helix 11
11
B
179 183Right-handed 310
Helix 12
12
B
204 208Right-handed 310
Helix 13
13
B
212 219Right-handed alpha
Helix 14
14
B
233 237Right-handed 310
Helix 15
15
C
13 25Right-handed alpha
Helix 16
16
C
73 85Right-handed alpha
Helix 17
17
C
101 107Right-handed 310
Helix 18
18
C
108 120Right-handed alpha
Helix 19
19
C
141 155Right-handed alpha
Helix 20
20
C
212 218Right-handed alpha
Helix 21
21
C
233 238Right-handed 310
Helix 22
22
D
13 24Right-handed alpha
Helix 23
23
D
73 85Right-handed alpha
Helix 24
24
D
112 120Right-handed alpha
Helix 25
25
D
137 153Right-handed alpha
Helix 26
26
D
178 183Right-handed 310
Helix 27
27
D
204 208Right-handed 310
Helix 28
28
D
212 219Right-handed alpha
Helix 29
29
D
233 237Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2E6E. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
221 226parallel
Strand 3
A
160 164anti-parallel
Strand 4
A
123 129parallel
Strand 5
A
90 97parallel
Strand 6
A
2 6parallel
Strand 7
A
28 34parallel
Strand 8
A
67 71parallel
Strand 9
A
49 55anti-parallel
Strand 10
B
196 201anti-parallel
Strand 11
B
185 190anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 190first strand
Strand 2
A
196 204anti-parallel
Strand 3
B
49 56anti-parallel
Strand 4
B
67 71anti-parallel
Strand 5
B
28 34parallel
Strand 6
B
2 6parallel
Strand 7
B
90 96parallel
Strand 8
B
123 128parallel
Strand 9
B
160 164parallel
Strand 10
B
221 226anti-parallel
Strand 11
B
171 174parallel
Back to list of sheets
Back to top of page

There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
222 226parallel
Strand 3
C
160 164anti-parallel
Strand 4
C
123 129parallel
Strand 5
C
90 97parallel
Strand 6
C
2 6parallel
Strand 7
C
28 34parallel
Strand 8
C
67 71parallel
Strand 9
C
50 55anti-parallel
Strand 10
D
196 201anti-parallel
Strand 11
D
185 190anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 190first strand
Strand 2
C
196 204anti-parallel
Strand 3
D
49 55anti-parallel
Strand 4
D
67 71anti-parallel
Strand 5
D
28 33parallel
Strand 6
D
2 6parallel
Strand 7
D
90 96parallel
Strand 8
D
123 128parallel
Strand 9
D
160 164parallel
Strand 10
D
222 226anti-parallel
Strand 11
D
172 174parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il